Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0027 and Dsui_0028 overlap by 4 nucleotides Dsui_0028 and Dsui_0029 are separated by 83 nucleotides Dsui_0029 and Dsui_0030 are separated by 141 nucleotides Dsui_0030 and Dsui_0031 are separated by 129 nucleotides
Dsui_0027: Dsui_0027 - putative effector of murein hydrolase LrgA, at 25,341 to 25,703
_0027
Dsui_0028: Dsui_0028 - putative effector of murein hydrolase, at 25,700 to 26,455
_0028
Dsui_0029: Dsui_0029 - putative pyrophosphatase, at 26,539 to 26,886
_0029
Dsui_0030: Dsui_0030 - FtsH-interacting integral membrane protein, at 27,028 to 27,720
_0030
Dsui_0031: Dsui_0031 - cation/cationic drug transporter, at 27,850 to 28,173
_0031
Position (kb)
26
27 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 25.596 kb on + strand, within Dsui_0027 at 25.660 kb on - strand, within Dsui_0027 at 25.667 kb on - strand at 25.667 kb on - strand at 25.739 kb on + strand at 25.741 kb on - strand at 25.777 kb on - strand, within Dsui_0028 at 25.785 kb on + strand, within Dsui_0028 at 25.793 kb on - strand at 25.828 kb on - strand at 25.979 kb on + strand, within Dsui_0028 at 26.007 kb on - strand, within Dsui_0028 at 26.008 kb on + strand, within Dsui_0028 at 26.008 kb on + strand, within Dsui_0028 at 26.016 kb on - strand, within Dsui_0028 at 26.028 kb on - strand, within Dsui_0028 at 26.028 kb on - strand, within Dsui_0028 at 26.044 kb on + strand at 26.235 kb on - strand, within Dsui_0028 at 26.262 kb on + strand, within Dsui_0028 at 26.275 kb on + strand at 26.345 kb on - strand, within Dsui_0028 at 26.377 kb on + strand, within Dsui_0028 at 26.386 kb on + strand at 26.434 kb on + strand at 26.538 kb on + strand at 26.545 kb on - strand at 26.567 kb on - strand at 26.574 kb on - strand, within Dsui_0029 at 26.665 kb on - strand, within Dsui_0029 at 26.671 kb on + strand, within Dsui_0029 at 26.724 kb on + strand, within Dsui_0029 at 26.732 kb on - strand, within Dsui_0029 at 26.785 kb on - strand at 26.810 kb on + strand, within Dsui_0029 at 26.825 kb on + strand, within Dsui_0029 at 26.825 kb on + strand, within Dsui_0029 at 27.046 kb on + strand at 27.054 kb on - strand at 27.079 kb on + strand at 27.085 kb on + strand at 27.087 kb on - strand at 27.087 kb on - strand at 27.110 kb on + strand, within Dsui_0030 at 27.150 kb on + strand, within Dsui_0030 at 27.306 kb on + strand at 27.343 kb on + strand at 27.385 kb on + strand at 27.750 kb on + strand at 27.840 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 25,596 + Dsui_0027 0.70 -1.8 25,660 - Dsui_0027 0.88 -0.8 25,667 - -1.4 25,667 - -1.4 25,739 + +0.2 25,741 - -0.8 25,777 - Dsui_0028 0.10 +0.2 25,785 + Dsui_0028 0.11 +0.2 25,793 - +0.2 25,828 - +0.2 25,979 + Dsui_0028 0.37 -0.8 26,007 - Dsui_0028 0.41 -0.8 26,008 + Dsui_0028 0.41 +0.2 26,008 + Dsui_0028 0.41 -2.6 26,016 - Dsui_0028 0.42 -0.8 26,028 - Dsui_0028 0.43 +0.2 26,028 - Dsui_0028 0.43 -0.8 26,044 + +0.2 26,235 - Dsui_0028 0.71 +0.2 26,262 + Dsui_0028 0.74 +0.2 26,275 + +0.2 26,345 - Dsui_0028 0.85 +0.2 26,377 + Dsui_0028 0.90 -1.4 26,386 + +0.2 26,434 + -1.8 26,538 + +0.2 26,545 - +0.2 26,567 - +0.2 26,574 - Dsui_0029 0.10 -0.8 26,665 - Dsui_0029 0.36 -1.8 26,671 + Dsui_0029 0.38 -0.8 26,724 + Dsui_0029 0.53 -2.4 26,732 - Dsui_0029 0.55 -1.8 26,785 - +0.2 26,810 + Dsui_0029 0.78 +0.2 26,825 + Dsui_0029 0.82 -2.4 26,825 + Dsui_0029 0.82 +0.2 27,046 + -1.4 27,054 - -1.4 27,079 + +0.2 27,085 + -0.8 27,087 - +0.2 27,087 - -2.6 27,110 + Dsui_0030 0.12 -1.8 27,150 + Dsui_0030 0.18 -2.8 27,306 + -0.8 27,343 + -1.8 27,385 + +0.2 27,750 + -0.2 27,840 + -0.1
Or see this region's nucleotide sequence