Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0025 and Dsui_0026 are separated by 129 nucleotides Dsui_0026 and Dsui_0027 are separated by 214 nucleotides Dsui_0027 and Dsui_0028 overlap by 4 nucleotides
Dsui_0025: Dsui_0025 - hypothetical protein, at 22,628 to 23,710
_0025
Dsui_0026: Dsui_0026 - CBS domain-containing protein, at 23,840 to 25,126
_0026
Dsui_0027: Dsui_0027 - putative effector of murein hydrolase LrgA, at 25,341 to 25,703
_0027
Dsui_0028: Dsui_0028 - putative effector of murein hydrolase, at 25,700 to 26,455
_0028
Position (kb) 23
24
25
26 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 22.882 kb on - strand at 22.992 kb on + strand, within Dsui_0025 at 23.197 kb on + strand at 23.322 kb on + strand, within Dsui_0025 at 23.381 kb on + strand, within Dsui_0025 at 23.577 kb on - strand, within Dsui_0025 at 23.589 kb on - strand at 23.753 kb on - strand at 23.787 kb on - strand at 23.807 kb on - strand at 23.825 kb on - strand at 23.858 kb on + strand at 23.892 kb on - strand at 23.965 kb on + strand at 24.096 kb on + strand, within Dsui_0026 at 24.136 kb on + strand, within Dsui_0026 at 24.200 kb on - strand, within Dsui_0026 at 24.204 kb on - strand at 24.215 kb on - strand at 24.230 kb on - strand, within Dsui_0026 at 24.264 kb on - strand, within Dsui_0026 at 24.344 kb on + strand, within Dsui_0026 at 24.364 kb on - strand, within Dsui_0026 at 24.364 kb on - strand, within Dsui_0026 at 24.378 kb on + strand, within Dsui_0026 at 24.386 kb on - strand, within Dsui_0026 at 24.455 kb on - strand at 24.556 kb on + strand at 24.556 kb on - strand at 24.566 kb on - strand, within Dsui_0026 at 24.615 kb on + strand, within Dsui_0026 at 24.637 kb on + strand, within Dsui_0026 at 24.686 kb on + strand at 24.706 kb on + strand, within Dsui_0026 at 24.741 kb on + strand at 24.749 kb on - strand, within Dsui_0026 at 24.817 kb on + strand at 24.823 kb on + strand, within Dsui_0026 at 24.831 kb on - strand, within Dsui_0026 at 24.853 kb on + strand at 24.861 kb on - strand, within Dsui_0026 at 24.918 kb on - strand, within Dsui_0026 at 24.976 kb on - strand, within Dsui_0026 at 25.099 kb on - strand at 25.190 kb on - strand at 25.233 kb on - strand at 25.287 kb on - strand at 25.355 kb on + strand at 25.396 kb on + strand at 25.480 kb on + strand at 25.498 kb on - strand at 25.596 kb on + strand, within Dsui_0027 at 25.660 kb on - strand, within Dsui_0027 at 25.667 kb on - strand at 25.667 kb on - strand at 25.739 kb on + strand at 25.741 kb on - strand at 25.777 kb on - strand, within Dsui_0028 at 25.785 kb on + strand, within Dsui_0028 at 25.793 kb on - strand at 25.828 kb on - strand at 25.979 kb on + strand, within Dsui_0028 at 26.007 kb on - strand, within Dsui_0028 at 26.008 kb on + strand, within Dsui_0028 at 26.008 kb on + strand, within Dsui_0028 at 26.016 kb on - strand, within Dsui_0028 at 26.028 kb on - strand, within Dsui_0028 at 26.028 kb on - strand, within Dsui_0028 at 26.044 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 22,882 - +0.2 22,992 + Dsui_0025 0.34 -2.6 23,197 + -0.8 23,322 + Dsui_0025 0.64 -2.7 23,381 + Dsui_0025 0.70 -2.8 23,577 - Dsui_0025 0.88 -1.4 23,589 - +0.2 23,753 - -3.2 23,787 - -1.8 23,807 - -0.8 23,825 - -2.4 23,858 + +0.2 23,892 - -1.4 23,965 + +0.2 24,096 + Dsui_0026 0.20 -1.4 24,136 + Dsui_0026 0.23 -0.8 24,200 - Dsui_0026 0.28 -4.5 24,204 - +0.2 24,215 - +0.2 24,230 - Dsui_0026 0.30 -2.6 24,264 - Dsui_0026 0.33 -1.8 24,344 + Dsui_0026 0.39 -1.8 24,364 - Dsui_0026 0.41 -1.4 24,364 - Dsui_0026 0.41 +0.2 24,378 + Dsui_0026 0.42 +0.2 24,386 - Dsui_0026 0.42 +0.2 24,455 - +0.2 24,556 + +0.2 24,556 - +0.2 24,566 - Dsui_0026 0.56 -1.4 24,615 + Dsui_0026 0.60 -0.8 24,637 + Dsui_0026 0.62 -0.8 24,686 + -0.8 24,706 + Dsui_0026 0.67 +0.2 24,741 + +0.2 24,749 - Dsui_0026 0.71 +0.2 24,817 + +0.2 24,823 + Dsui_0026 0.76 -2.1 24,831 - Dsui_0026 0.77 +0.2 24,853 + -1.4 24,861 - Dsui_0026 0.79 +0.2 24,918 - Dsui_0026 0.84 -3.4 24,976 - Dsui_0026 0.88 -0.8 25,099 - +0.2 25,190 - -0.8 25,233 - +0.2 25,287 - -0.8 25,355 + -0.8 25,396 + +0.2 25,480 + +0.2 25,498 - +0.2 25,596 + Dsui_0027 0.70 -1.8 25,660 - Dsui_0027 0.88 -0.8 25,667 - -1.4 25,667 - -1.4 25,739 + +0.2 25,741 - -0.8 25,777 - Dsui_0028 0.10 +0.2 25,785 + Dsui_0028 0.11 +0.2 25,793 - +0.2 25,828 - +0.2 25,979 + Dsui_0028 0.37 -0.8 26,007 - Dsui_0028 0.41 -0.8 26,008 + Dsui_0028 0.41 +0.2 26,008 + Dsui_0028 0.41 -2.6 26,016 - Dsui_0028 0.42 -0.8 26,028 - Dsui_0028 0.43 +0.2 26,028 - Dsui_0028 0.43 -0.8 26,044 + +0.2
Or see this region's nucleotide sequence