Strain Fitness in Dechlorosoma suillum PS around Dsui_0003

Experiment: ALP with perchlorate 3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0001 and Dsui_0002 are separated by 67 nucleotidesDsui_0002 and Dsui_0003 are separated by 80 nucleotidesDsui_0003 and Dsui_0004 are separated by 42 nucleotidesDsui_0004 and Dsui_0005 are separated by 32 nucleotides Dsui_0001: Dsui_0001 - aminodeoxychorismate synthase, component I, at 103 to 1,923 _0001 Dsui_0002: Dsui_0002 - putative redox protein, regulator of disulfide bond formation, at 1,991 to 2,218 _0002 Dsui_0003: Dsui_0003 - putative Zn-dependent protease, at 2,299 to 3,786 _0003 Dsui_0004: Dsui_0004 - molybdenum cofactor biosynthesis protein MoaC, at 3,829 to 4,323 _0004 Dsui_0005: Dsui_0005 - putative secreted protein, at 4,356 to 4,826 _0005 Position (kb) 2 3 4Strain fitness (log2 ratio) -3 -2 -1 0 1at 1.360 kb on + strand, within Dsui_0001at 1.368 kb on - strand, within Dsui_0001at 1.488 kb on - strand, within Dsui_0001at 1.514 kb on + strand, within Dsui_0001at 1.613 kb on + strand, within Dsui_0001at 1.621 kb on - strand, within Dsui_0001at 1.810 kb on + strandat 1.823 kb on - strandat 1.846 kb on - strandat 1.846 kb on - strandat 1.894 kb on - strandat 2.403 kb on - strandat 2.450 kb on - strand, within Dsui_0003at 2.534 kb on - strand, within Dsui_0003at 2.548 kb on - strand, within Dsui_0003at 2.572 kb on - strand, within Dsui_0003at 2.577 kb on - strand, within Dsui_0003at 2.977 kb on - strand, within Dsui_0003at 3.026 kb on - strand, within Dsui_0003at 3.131 kb on - strandat 3.222 kb on - strand, within Dsui_0003at 3.413 kb on - strand, within Dsui_0003at 3.503 kb on - strand, within Dsui_0003at 3.503 kb on - strandat 3.503 kb on - strand, within Dsui_0003at 3.567 kb on - strand, within Dsui_0003at 3.791 kb on + strandat 3.833 kb on - strandat 3.833 kb on - strandat 3.861 kb on - strandat 4.008 kb on + strand, within Dsui_0004at 4.035 kb on + strand, within Dsui_0004at 4.079 kb on + strand, within Dsui_0004at 4.093 kb on - strandat 4.099 kb on + strand, within Dsui_0004at 4.205 kb on + strand, within Dsui_0004at 4.230 kb on - strand, within Dsui_0004at 4.241 kb on - strandat 4.260 kb on + strand, within Dsui_0004at 4.426 kb on - strand, within Dsui_0005at 4.426 kb on - strandat 4.504 kb on - strand, within Dsui_0005at 4.522 kb on - strand, within Dsui_0005at 4.630 kb on + strand, within Dsui_0005at 4.631 kb on - strand, within Dsui_0005at 4.695 kb on + strand, within Dsui_0005at 4.705 kb on + strand, within Dsui_0005at 4.705 kb on + strand, within Dsui_0005at 4.705 kb on + strand, within Dsui_0005at 4.705 kb on + strand, within Dsui_0005at 4.713 kb on - strand, within Dsui_0005at 4.725 kb on - strand, within Dsui_0005at 4.742 kb on + strand, within Dsui_0005at 4.750 kb on - strand, within Dsui_0005at 4.750 kb on - strand, within Dsui_0005at 4.750 kb on - strand, within Dsui_0005at 4.750 kb on - strand, within Dsui_0005at 4.762 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM
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1,360 + Dsui_0001 0.69 -3.1
1,368 - Dsui_0001 0.69 -0.4
1,488 - Dsui_0001 0.76 -0.2
1,514 + Dsui_0001 0.77 -2.4
1,613 + Dsui_0001 0.83 -1.4
1,621 - Dsui_0001 0.83 +0.2
1,810 + -0.8
1,823 - -0.1
1,846 - -1.1
1,846 - -0.0
1,894 - +0.2
2,403 - -2.1
2,450 - Dsui_0003 0.10 -2.6
2,534 - Dsui_0003 0.16 +0.5
2,548 - Dsui_0003 0.17 -1.7
2,572 - Dsui_0003 0.18 -2.5
2,577 - Dsui_0003 0.19 -3.0
2,977 - Dsui_0003 0.46 -1.1
3,026 - Dsui_0003 0.49 -1.8
3,131 - -0.8
3,222 - Dsui_0003 0.62 -1.7
3,413 - Dsui_0003 0.75 -1.4
3,503 - Dsui_0003 0.81 -2.2
3,503 - -0.8
3,503 - Dsui_0003 0.81 -3.0
3,567 - Dsui_0003 0.85 -2.7
3,791 + -0.0
3,833 - -0.8
3,833 - -1.4
3,861 - -1.8
4,008 + Dsui_0004 0.36 +0.1
4,035 + Dsui_0004 0.42 -0.0
4,079 + Dsui_0004 0.51 -0.2
4,093 - -0.8
4,099 + Dsui_0004 0.55 +0.2
4,205 + Dsui_0004 0.76 +0.1
4,230 - Dsui_0004 0.81 -2.4
4,241 - +0.2
4,260 + Dsui_0004 0.87 -0.1
4,426 - Dsui_0005 0.15 -0.8
4,426 - +0.2
4,504 - Dsui_0005 0.31 +0.2
4,522 - Dsui_0005 0.35 -0.8
4,630 + Dsui_0005 0.58 -0.1
4,631 - Dsui_0005 0.58 -0.8
4,695 + Dsui_0005 0.72 -0.3
4,705 + Dsui_0005 0.74 -0.1
4,705 + Dsui_0005 0.74 -0.1
4,705 + Dsui_0005 0.74 -0.1
4,705 + Dsui_0005 0.74 +0.5
4,713 - Dsui_0005 0.76 -0.8
4,725 - Dsui_0005 0.78 +0.2
4,742 + Dsui_0005 0.82 +0.0
4,750 - Dsui_0005 0.84 +0.2
4,750 - Dsui_0005 0.84 +0.2
4,750 - Dsui_0005 0.84 -1.4
4,750 - Dsui_0005 0.84 -2.1
4,762 - +0.2

Or see this region's nucleotide sequence