Experiment: Putrescine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS10690 and BWI76_RS10695 are separated by 2 nucleotides BWI76_RS10695 and BWI76_RS10700 are separated by 245 nucleotides BWI76_RS10700 and BWI76_RS10705 are separated by 25 nucleotides
BWI76_RS10690: BWI76_RS10690 - gamma-glutamylputrescine oxidoreductase, at 2,258,847 to 2,260,127
_RS10690
BWI76_RS10695: BWI76_RS10695 - aldehyde dehydrogenase PuuC, at 2,260,130 to 2,261,617
_RS10695
BWI76_RS10700: BWI76_RS10700 - XRE family transcriptional regulator, at 2,261,863 to 2,262,420
_RS10700
BWI76_RS10705: BWI76_RS10705 - Gamma-glutamyl-gamma-aminobutyrate hydrolase (EC 3.5.1.94) (from data) , at 2,262,446 to 2,263,210
_RS10705
Position (kb)
2260
2261
2262 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2259.456 kb on - strand, within BWI76_RS10690 at 2259.729 kb on - strand, within BWI76_RS10690 at 2259.731 kb on - strand, within BWI76_RS10690 at 2259.828 kb on + strand, within BWI76_RS10690 at 2259.909 kb on - strand, within BWI76_RS10690 at 2260.534 kb on - strand, within BWI76_RS10695 at 2260.554 kb on - strand, within BWI76_RS10695 at 2260.643 kb on - strand, within BWI76_RS10695 at 2260.715 kb on + strand, within BWI76_RS10695 at 2260.715 kb on + strand, within BWI76_RS10695 at 2260.771 kb on + strand, within BWI76_RS10695 at 2260.845 kb on - strand, within BWI76_RS10695 at 2261.044 kb on + strand, within BWI76_RS10695 at 2261.160 kb on + strand, within BWI76_RS10695 at 2261.206 kb on - strand, within BWI76_RS10695 at 2261.317 kb on + strand, within BWI76_RS10695 at 2261.374 kb on + strand, within BWI76_RS10695 at 2261.431 kb on - strand, within BWI76_RS10695 at 2261.470 kb on + strand at 2261.516 kb on + strand at 2261.696 kb on + strand at 2262.144 kb on - strand, within BWI76_RS10700 at 2262.196 kb on - strand, within BWI76_RS10700 at 2262.321 kb on + strand, within BWI76_RS10700 at 2262.329 kb on - strand, within BWI76_RS10700 at 2262.473 kb on + strand at 2262.543 kb on + strand, within BWI76_RS10705 at 2262.563 kb on + strand, within BWI76_RS10705
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine (N) remove 2,259,456 - BWI76_RS10690 0.48 -2.7 2,259,729 - BWI76_RS10690 0.69 -1.9 2,259,731 - BWI76_RS10690 0.69 -2.4 2,259,828 + BWI76_RS10690 0.77 -3.5 2,259,909 - BWI76_RS10690 0.83 -4.4 2,260,534 - BWI76_RS10695 0.27 -2.1 2,260,554 - BWI76_RS10695 0.28 -2.2 2,260,643 - BWI76_RS10695 0.34 -0.6 2,260,715 + BWI76_RS10695 0.39 -2.8 2,260,715 + BWI76_RS10695 0.39 -3.9 2,260,771 + BWI76_RS10695 0.43 -2.5 2,260,845 - BWI76_RS10695 0.48 -2.4 2,261,044 + BWI76_RS10695 0.61 -2.5 2,261,160 + BWI76_RS10695 0.69 -4.1 2,261,206 - BWI76_RS10695 0.72 -3.0 2,261,317 + BWI76_RS10695 0.80 -1.5 2,261,374 + BWI76_RS10695 0.84 -3.7 2,261,431 - BWI76_RS10695 0.87 -2.3 2,261,470 + -3.5 2,261,516 + -4.3 2,261,696 + -4.5 2,262,144 - BWI76_RS10700 0.50 -1.1 2,262,196 - BWI76_RS10700 0.60 -1.7 2,262,321 + BWI76_RS10700 0.82 -2.0 2,262,329 - BWI76_RS10700 0.84 -0.8 2,262,473 + -3.3 2,262,543 + BWI76_RS10705 0.13 -5.2 2,262,563 + BWI76_RS10705 0.15 -3.6
Or see this region's nucleotide sequence