Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10695

Experiment: Putrescine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS10690 and BWI76_RS10695 are separated by 2 nucleotidesBWI76_RS10695 and BWI76_RS10700 are separated by 245 nucleotidesBWI76_RS10700 and BWI76_RS10705 are separated by 25 nucleotides BWI76_RS10690: BWI76_RS10690 - gamma-glutamylputrescine oxidoreductase, at 2,258,847 to 2,260,127 _RS10690 BWI76_RS10695: BWI76_RS10695 - aldehyde dehydrogenase PuuC, at 2,260,130 to 2,261,617 _RS10695 BWI76_RS10700: BWI76_RS10700 - XRE family transcriptional regulator, at 2,261,863 to 2,262,420 _RS10700 BWI76_RS10705: BWI76_RS10705 - Gamma-glutamyl-gamma-aminobutyrate hydrolase (EC 3.5.1.94) (from data), at 2,262,446 to 2,263,210 _RS10705 Position (kb) 2260 2261 2262Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2259.456 kb on - strand, within BWI76_RS10690at 2259.729 kb on - strand, within BWI76_RS10690at 2259.731 kb on - strand, within BWI76_RS10690at 2259.828 kb on + strand, within BWI76_RS10690at 2259.909 kb on - strand, within BWI76_RS10690at 2260.534 kb on - strand, within BWI76_RS10695at 2260.554 kb on - strand, within BWI76_RS10695at 2260.643 kb on - strand, within BWI76_RS10695at 2260.715 kb on + strand, within BWI76_RS10695at 2260.715 kb on + strand, within BWI76_RS10695at 2260.771 kb on + strand, within BWI76_RS10695at 2260.845 kb on - strand, within BWI76_RS10695at 2261.044 kb on + strand, within BWI76_RS10695at 2261.160 kb on + strand, within BWI76_RS10695at 2261.206 kb on - strand, within BWI76_RS10695at 2261.317 kb on + strand, within BWI76_RS10695at 2261.374 kb on + strand, within BWI76_RS10695at 2261.431 kb on - strand, within BWI76_RS10695at 2261.470 kb on + strandat 2261.516 kb on + strandat 2261.696 kb on + strandat 2262.144 kb on - strand, within BWI76_RS10700at 2262.196 kb on - strand, within BWI76_RS10700at 2262.321 kb on + strand, within BWI76_RS10700at 2262.329 kb on - strand, within BWI76_RS10700at 2262.473 kb on + strandat 2262.543 kb on + strand, within BWI76_RS10705at 2262.563 kb on + strand, within BWI76_RS10705

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (N)
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2,259,456 - BWI76_RS10690 0.48 -2.7
2,259,729 - BWI76_RS10690 0.69 -1.9
2,259,731 - BWI76_RS10690 0.69 -2.4
2,259,828 + BWI76_RS10690 0.77 -3.5
2,259,909 - BWI76_RS10690 0.83 -4.4
2,260,534 - BWI76_RS10695 0.27 -2.1
2,260,554 - BWI76_RS10695 0.28 -2.2
2,260,643 - BWI76_RS10695 0.34 -0.6
2,260,715 + BWI76_RS10695 0.39 -2.8
2,260,715 + BWI76_RS10695 0.39 -3.9
2,260,771 + BWI76_RS10695 0.43 -2.5
2,260,845 - BWI76_RS10695 0.48 -2.4
2,261,044 + BWI76_RS10695 0.61 -2.5
2,261,160 + BWI76_RS10695 0.69 -4.1
2,261,206 - BWI76_RS10695 0.72 -3.0
2,261,317 + BWI76_RS10695 0.80 -1.5
2,261,374 + BWI76_RS10695 0.84 -3.7
2,261,431 - BWI76_RS10695 0.87 -2.3
2,261,470 + -3.5
2,261,516 + -4.3
2,261,696 + -4.5
2,262,144 - BWI76_RS10700 0.50 -1.1
2,262,196 - BWI76_RS10700 0.60 -1.7
2,262,321 + BWI76_RS10700 0.82 -2.0
2,262,329 - BWI76_RS10700 0.84 -0.8
2,262,473 + -3.3
2,262,543 + BWI76_RS10705 0.13 -5.2
2,262,563 + BWI76_RS10705 0.15 -3.6

Or see this region's nucleotide sequence