Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10690

Experiment: Putrescine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS10685 and BWI76_RS10690 overlap by 4 nucleotidesBWI76_RS10690 and BWI76_RS10695 are separated by 2 nucleotides BWI76_RS10685: BWI76_RS10685 - LysR family transcriptional regulator, at 2,257,894 to 2,258,850 _RS10685 BWI76_RS10690: BWI76_RS10690 - gamma-glutamylputrescine oxidoreductase, at 2,258,847 to 2,260,127 _RS10690 BWI76_RS10695: BWI76_RS10695 - aldehyde dehydrogenase PuuC, at 2,260,130 to 2,261,617 _RS10695 Position (kb) 2258 2259 2260 2261Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2257.928 kb on + strandat 2257.928 kb on + strandat 2258.359 kb on - strand, within BWI76_RS10685at 2258.458 kb on + strand, within BWI76_RS10685at 2258.466 kb on - strand, within BWI76_RS10685at 2258.466 kb on - strand, within BWI76_RS10685at 2258.466 kb on - strand, within BWI76_RS10685at 2258.537 kb on + strand, within BWI76_RS10685at 2259.014 kb on + strand, within BWI76_RS10690at 2259.037 kb on + strand, within BWI76_RS10690at 2259.456 kb on - strand, within BWI76_RS10690at 2259.729 kb on - strand, within BWI76_RS10690at 2259.731 kb on - strand, within BWI76_RS10690at 2259.828 kb on + strand, within BWI76_RS10690at 2259.909 kb on - strand, within BWI76_RS10690at 2260.534 kb on - strand, within BWI76_RS10695at 2260.554 kb on - strand, within BWI76_RS10695at 2260.643 kb on - strand, within BWI76_RS10695at 2260.715 kb on + strand, within BWI76_RS10695at 2260.715 kb on + strand, within BWI76_RS10695at 2260.771 kb on + strand, within BWI76_RS10695at 2260.845 kb on - strand, within BWI76_RS10695at 2261.044 kb on + strand, within BWI76_RS10695

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (N)
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2,257,928 + -0.3
2,257,928 + -0.2
2,258,359 - BWI76_RS10685 0.49 +0.5
2,258,458 + BWI76_RS10685 0.59 +0.6
2,258,466 - BWI76_RS10685 0.60 +0.9
2,258,466 - BWI76_RS10685 0.60 -0.2
2,258,466 - BWI76_RS10685 0.60 +0.1
2,258,537 + BWI76_RS10685 0.67 -0.7
2,259,014 + BWI76_RS10690 0.13 -4.5
2,259,037 + BWI76_RS10690 0.15 -3.0
2,259,456 - BWI76_RS10690 0.48 -2.7
2,259,729 - BWI76_RS10690 0.69 -1.9
2,259,731 - BWI76_RS10690 0.69 -2.4
2,259,828 + BWI76_RS10690 0.77 -3.5
2,259,909 - BWI76_RS10690 0.83 -4.4
2,260,534 - BWI76_RS10695 0.27 -2.1
2,260,554 - BWI76_RS10695 0.28 -2.2
2,260,643 - BWI76_RS10695 0.34 -0.6
2,260,715 + BWI76_RS10695 0.39 -2.8
2,260,715 + BWI76_RS10695 0.39 -3.9
2,260,771 + BWI76_RS10695 0.43 -2.5
2,260,845 - BWI76_RS10695 0.48 -2.4
2,261,044 + BWI76_RS10695 0.61 -2.5

Or see this region's nucleotide sequence