Experiment: Putrescine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03495 and BWI76_RS03500 are separated by 857 nucleotides BWI76_RS03500 and BWI76_RS03505 are separated by 40 nucleotides
BWI76_RS03495: BWI76_RS03495 - 5S ribosomal RNA, at 723,001 to 723,116
_RS03495
BWI76_RS03500: BWI76_RS03500 - hypothetical protein, at 723,974 to 724,291
_RS03500
BWI76_RS03505: BWI76_RS03505 - membrane protein, at 724,332 to 725,456
_RS03505
Position (kb) 723
724
725 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 723.126 kb on + strand at 723.196 kb on - strand at 723.242 kb on - strand at 723.362 kb on + strand at 723.378 kb on - strand at 723.380 kb on - strand at 723.383 kb on + strand at 723.733 kb on + strand at 723.734 kb on + strand at 723.738 kb on + strand at 723.738 kb on + strand at 723.746 kb on - strand at 723.746 kb on - strand at 723.769 kb on + strand at 723.769 kb on - strand at 723.778 kb on - strand at 723.791 kb on + strand at 723.791 kb on + strand at 723.791 kb on + strand at 723.791 kb on + strand at 723.791 kb on + strand at 723.791 kb on + strand at 723.792 kb on + strand at 723.792 kb on + strand at 723.792 kb on + strand at 723.792 kb on + strand at 723.792 kb on + strand at 723.793 kb on + strand at 723.793 kb on + strand at 723.799 kb on - strand at 723.799 kb on - strand at 723.799 kb on - strand at 723.799 kb on - strand at 723.800 kb on - strand at 723.800 kb on - strand at 723.800 kb on - strand at 723.800 kb on - strand at 723.822 kb on + strand at 723.830 kb on - strand at 723.830 kb on - strand at 723.832 kb on + strand at 723.832 kb on + strand at 723.832 kb on + strand at 723.832 kb on + strand at 723.832 kb on + strand at 723.832 kb on + strand at 723.832 kb on + strand at 723.832 kb on + strand at 723.840 kb on - strand at 723.840 kb on - strand at 723.840 kb on - strand at 723.840 kb on - strand at 723.840 kb on - strand at 723.857 kb on + strand at 723.865 kb on - strand at 723.892 kb on + strand at 723.893 kb on - strand at 723.904 kb on + strand at 723.911 kb on - strand at 723.911 kb on - strand at 723.912 kb on - strand at 723.912 kb on - strand at 723.912 kb on - strand at 723.917 kb on - strand at 723.918 kb on - strand at 723.930 kb on + strand at 723.961 kb on - strand at 723.993 kb on + strand at 723.993 kb on + strand at 723.998 kb on + strand at 723.998 kb on + strand at 723.998 kb on + strand at 723.998 kb on + strand at 723.998 kb on + strand at 723.998 kb on + strand at 723.998 kb on + strand at 723.998 kb on + strand at 723.998 kb on + strand at 723.998 kb on + strand at 723.998 kb on + strand at 723.998 kb on + strand at 723.998 kb on + strand at 723.998 kb on + strand at 723.998 kb on + strand at 723.998 kb on + strand at 723.998 kb on + strand at 723.998 kb on + strand at 724.001 kb on - strand at 724.006 kb on - strand, within BWI76_RS03500 at 724.006 kb on - strand, within BWI76_RS03500 at 724.006 kb on - strand, within BWI76_RS03500 at 724.006 kb on - strand, within BWI76_RS03500 at 724.006 kb on - strand, within BWI76_RS03500 at 724.006 kb on - strand, within BWI76_RS03500 at 724.006 kb on - strand, within BWI76_RS03500 at 724.006 kb on - strand, within BWI76_RS03500 at 724.006 kb on - strand, within BWI76_RS03500 at 724.006 kb on - strand, within BWI76_RS03500 at 724.006 kb on - strand, within BWI76_RS03500 at 724.006 kb on - strand, within BWI76_RS03500 at 724.006 kb on - strand, within BWI76_RS03500 at 724.030 kb on + strand, within BWI76_RS03500 at 724.031 kb on + strand at 724.031 kb on + strand, within BWI76_RS03500 at 724.039 kb on - strand, within BWI76_RS03500 at 724.039 kb on - strand, within BWI76_RS03500 at 724.039 kb on - strand, within BWI76_RS03500 at 724.039 kb on - strand, within BWI76_RS03500 at 724.039 kb on - strand, within BWI76_RS03500 at 724.040 kb on - strand, within BWI76_RS03500 at 724.045 kb on + strand, within BWI76_RS03500 at 724.045 kb on + strand, within BWI76_RS03500 at 724.046 kb on + strand, within BWI76_RS03500 at 724.054 kb on + strand, within BWI76_RS03500 at 724.062 kb on - strand, within BWI76_RS03500 at 724.064 kb on + strand, within BWI76_RS03500 at 724.064 kb on + strand, within BWI76_RS03500 at 724.064 kb on + strand, within BWI76_RS03500 at 724.064 kb on + strand, within BWI76_RS03500 at 724.064 kb on + strand, within BWI76_RS03500 at 724.064 kb on + strand, within BWI76_RS03500 at 724.064 kb on + strand, within BWI76_RS03500 at 724.064 kb on + strand, within BWI76_RS03500 at 724.072 kb on - strand, within BWI76_RS03500 at 724.091 kb on + strand, within BWI76_RS03500 at 724.096 kb on - strand, within BWI76_RS03500 at 724.106 kb on - strand, within BWI76_RS03500 at 724.106 kb on - strand, within BWI76_RS03500 at 724.247 kb on + strand, within BWI76_RS03500 at 724.252 kb on + strand, within BWI76_RS03500 at 724.255 kb on - strand, within BWI76_RS03500 at 724.255 kb on - strand, within BWI76_RS03500 at 724.260 kb on - strand at 724.260 kb on - strand at 724.260 kb on - strand at 724.318 kb on + strand at 724.331 kb on - strand at 724.401 kb on - strand at 724.471 kb on - strand, within BWI76_RS03505 at 724.514 kb on - strand, within BWI76_RS03505 at 724.582 kb on + strand, within BWI76_RS03505 at 724.727 kb on - strand, within BWI76_RS03505 at 724.733 kb on + strand, within BWI76_RS03505 at 724.733 kb on + strand, within BWI76_RS03505 at 725.078 kb on - strand, within BWI76_RS03505 at 725.095 kb on + strand, within BWI76_RS03505 at 725.103 kb on - strand, within BWI76_RS03505 at 725.233 kb on + strand, within BWI76_RS03505
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine (N) remove 723,126 + -0.3 723,196 - +0.1 723,242 - -0.3 723,362 + +0.2 723,378 - -0.8 723,380 - +1.5 723,383 + -2.0 723,733 + -0.2 723,734 + -1.0 723,738 + +0.1 723,738 + -0.6 723,746 - -0.1 723,746 - +1.4 723,769 + +0.5 723,769 - -0.2 723,778 - -0.7 723,791 + +0.0 723,791 + -0.1 723,791 + -3.0 723,791 + +0.0 723,791 + +2.3 723,791 + -0.3 723,792 + -0.7 723,792 + -0.1 723,792 + -0.2 723,792 + -0.0 723,792 + +0.5 723,793 + -1.1 723,793 + -0.6 723,799 - +1.9 723,799 - -1.0 723,799 - -1.1 723,799 - -0.2 723,800 - -1.0 723,800 - -1.6 723,800 - +0.4 723,800 - -2.0 723,822 + -1.8 723,830 - -1.1 723,830 - +1.2 723,832 + -2.0 723,832 + -0.5 723,832 + -1.4 723,832 + -0.4 723,832 + -0.1 723,832 + -0.5 723,832 + +0.7 723,832 + +1.5 723,840 - +0.6 723,840 - -0.1 723,840 - -0.9 723,840 - -1.0 723,840 - -0.3 723,857 + -0.9 723,865 - -1.2 723,892 + +0.1 723,893 - -0.2 723,904 + +0.3 723,911 - -1.9 723,911 - -1.3 723,912 - -0.1 723,912 - -1.0 723,912 - -2.1 723,917 - -1.1 723,918 - +0.3 723,930 + +0.7 723,961 - +2.6 723,993 + -0.5 723,993 + -0.1 723,998 + -0.7 723,998 + -0.4 723,998 + -1.6 723,998 + -0.7 723,998 + -1.1 723,998 + -0.5 723,998 + -0.9 723,998 + +0.7 723,998 + +0.2 723,998 + -0.8 723,998 + -2.7 723,998 + -1.1 723,998 + -1.0 723,998 + -2.2 723,998 + +0.5 723,998 + -1.1 723,998 + -1.2 723,998 + +0.4 724,001 - -0.5 724,006 - BWI76_RS03500 0.10 -1.8 724,006 - BWI76_RS03500 0.10 -0.2 724,006 - BWI76_RS03500 0.10 -2.3 724,006 - BWI76_RS03500 0.10 -1.5 724,006 - BWI76_RS03500 0.10 -0.8 724,006 - BWI76_RS03500 0.10 -0.6 724,006 - BWI76_RS03500 0.10 -0.9 724,006 - BWI76_RS03500 0.10 -2.1 724,006 - BWI76_RS03500 0.10 -0.8 724,006 - BWI76_RS03500 0.10 -0.3 724,006 - BWI76_RS03500 0.10 -1.7 724,006 - BWI76_RS03500 0.10 -1.4 724,006 - BWI76_RS03500 0.10 -1.2 724,030 + BWI76_RS03500 0.18 -1.0 724,031 + +1.9 724,031 + BWI76_RS03500 0.18 -1.0 724,039 - BWI76_RS03500 0.20 -1.3 724,039 - BWI76_RS03500 0.20 -2.0 724,039 - BWI76_RS03500 0.20 -1.5 724,039 - BWI76_RS03500 0.20 +0.7 724,039 - BWI76_RS03500 0.20 -0.8 724,040 - BWI76_RS03500 0.21 -0.6 724,045 + BWI76_RS03500 0.22 -0.8 724,045 + BWI76_RS03500 0.22 -1.0 724,046 + BWI76_RS03500 0.23 -0.9 724,054 + BWI76_RS03500 0.25 -1.6 724,062 - BWI76_RS03500 0.28 -0.3 724,064 + BWI76_RS03500 0.28 -0.8 724,064 + BWI76_RS03500 0.28 +0.6 724,064 + BWI76_RS03500 0.28 -0.2 724,064 + BWI76_RS03500 0.28 -2.4 724,064 + BWI76_RS03500 0.28 -0.9 724,064 + BWI76_RS03500 0.28 -1.0 724,064 + BWI76_RS03500 0.28 -0.6 724,064 + BWI76_RS03500 0.28 -0.5 724,072 - BWI76_RS03500 0.31 -1.4 724,091 + BWI76_RS03500 0.37 -3.6 724,096 - BWI76_RS03500 0.38 -0.7 724,106 - BWI76_RS03500 0.42 -1.6 724,106 - BWI76_RS03500 0.42 +0.1 724,247 + BWI76_RS03500 0.86 -1.1 724,252 + BWI76_RS03500 0.87 -0.4 724,255 - BWI76_RS03500 0.88 -1.1 724,255 - BWI76_RS03500 0.88 +0.0 724,260 - -1.5 724,260 - -1.2 724,260 - -0.4 724,318 + +0.2 724,331 - -0.6 724,401 - +0.2 724,471 - BWI76_RS03505 0.12 +0.8 724,514 - BWI76_RS03505 0.16 +0.4 724,582 + BWI76_RS03505 0.22 -0.7 724,727 - BWI76_RS03505 0.35 -0.8 724,733 + BWI76_RS03505 0.36 -2.1 724,733 + BWI76_RS03505 0.36 -0.6 725,078 - BWI76_RS03505 0.66 -0.2 725,095 + BWI76_RS03505 0.68 +0.6 725,103 - BWI76_RS03505 0.69 -0.9 725,233 + BWI76_RS03505 0.80 -0.4
Or see this region's nucleotide sequence