Experiment: L-Methionine as nutrient
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2435 and DvMF_2436 are separated by 3 nucleotides DvMF_2436 and DvMF_2437 are separated by 11 nucleotides DvMF_2437 and DvMF_2438 overlap by 8 nucleotides
DvMF_2435: DvMF_2435 - type III secretion system ATPase (RefSeq), at 3,070,214 to 3,071,530
_2435
DvMF_2436: DvMF_2436 - type III secretion YscO fmaily protein (RefSeq), at 3,071,534 to 3,072,037
_2436
DvMF_2437: DvMF_2437 - type III secretion system needle length determinant (RefSeq), at 3,072,049 to 3,072,813
_2437
DvMF_2438: DvMF_2438 - type III secretion system apparatus protein YscQ/HrcQ (RefSeq), at 3,072,806 to 3,074,035
_2438
Position (kb)
3071
3072
3073 Strain fitness (log2 ratio)
-1
0
1 at 3070.617 kb on - strand, within DvMF_2435 at 3070.650 kb on + strand, within DvMF_2435 at 3070.650 kb on + strand, within DvMF_2435 at 3070.658 kb on - strand, within DvMF_2435 at 3070.658 kb on - strand, within DvMF_2435 at 3070.742 kb on + strand, within DvMF_2435 at 3070.950 kb on + strand, within DvMF_2435 at 3071.345 kb on + strand, within DvMF_2435 at 3071.454 kb on - strand at 3071.512 kb on + strand at 3071.634 kb on + strand, within DvMF_2436 at 3071.674 kb on - strand, within DvMF_2436 at 3071.761 kb on + strand, within DvMF_2436 at 3071.761 kb on + strand, within DvMF_2436 at 3071.769 kb on - strand, within DvMF_2436 at 3071.835 kb on + strand, within DvMF_2436 at 3071.902 kb on + strand, within DvMF_2436 at 3071.986 kb on + strand, within DvMF_2436 at 3071.994 kb on - strand at 3071.994 kb on - strand at 3072.167 kb on + strand, within DvMF_2437 at 3072.292 kb on - strand, within DvMF_2437 at 3072.470 kb on + strand, within DvMF_2437 at 3072.600 kb on + strand, within DvMF_2437 at 3072.725 kb on - strand, within DvMF_2437 at 3072.807 kb on - strand at 3072.850 kb on - strand at 3072.914 kb on - strand at 3072.916 kb on + strand at 3072.930 kb on + strand, within DvMF_2438 at 3072.938 kb on - strand, within DvMF_2438
Per-strain Table
Position Strand Gene LocusTag Fraction L-Methionine as nutrient remove 3,070,617 - DvMF_2435 0.31 +0.5 3,070,650 + DvMF_2435 0.33 +0.4 3,070,650 + DvMF_2435 0.33 +0.7 3,070,658 - DvMF_2435 0.34 +0.2 3,070,658 - DvMF_2435 0.34 +0.5 3,070,742 + DvMF_2435 0.40 +0.2 3,070,950 + DvMF_2435 0.56 +0.2 3,071,345 + DvMF_2435 0.86 +0.1 3,071,454 - +0.6 3,071,512 + +0.0 3,071,634 + DvMF_2436 0.20 +0.8 3,071,674 - DvMF_2436 0.28 +1.4 3,071,761 + DvMF_2436 0.45 +0.3 3,071,761 + DvMF_2436 0.45 +0.5 3,071,769 - DvMF_2436 0.47 +0.4 3,071,835 + DvMF_2436 0.60 +0.7 3,071,902 + DvMF_2436 0.73 +1.1 3,071,986 + DvMF_2436 0.90 -0.0 3,071,994 - -0.4 3,071,994 - +0.3 3,072,167 + DvMF_2437 0.15 +0.4 3,072,292 - DvMF_2437 0.32 +0.1 3,072,470 + DvMF_2437 0.55 +0.1 3,072,600 + DvMF_2437 0.72 +1.5 3,072,725 - DvMF_2437 0.88 +0.5 3,072,807 - -0.1 3,072,850 - +0.3 3,072,914 - +1.0 3,072,916 + +0.4 3,072,930 + DvMF_2438 0.10 +0.6 3,072,938 - DvMF_2438 0.11 +0.1
Or see this region's nucleotide sequence