Experiment: L-Methionine as nutrient
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2411 and DvMF_2412 are separated by 60 nucleotides DvMF_2412 and DvMF_2413 are separated by 6 nucleotides DvMF_2413 and DvMF_2414 are separated by 7 nucleotides
DvMF_2411: DvMF_2411 - sigma54 specific transcriptional regulator, Fis family (RefSeq), at 3,049,838 to 3,051,172
_2411
DvMF_2412: DvMF_2412 - type III secretion protein, YscU/HrpY family (RefSeq), at 3,051,233 to 3,052,273
_2412
DvMF_2413: DvMF_2413 - type III secretion protein SpaR/YscT/HrcT (RefSeq), at 3,052,280 to 3,053,116
_2413
DvMF_2414: DvMF_2414 - type III secretion protein, HrpO family (RefSeq), at 3,053,124 to 3,053,384
_2414
Position (kb)
3051
3052
3053 Strain fitness (log2 ratio)
-1
0
1 at 3050.269 kb on - strand, within DvMF_2411 at 3050.295 kb on + strand, within DvMF_2411 at 3050.460 kb on + strand, within DvMF_2411 at 3050.542 kb on + strand, within DvMF_2411 at 3050.696 kb on + strand, within DvMF_2411 at 3050.910 kb on + strand, within DvMF_2411 at 3051.112 kb on - strand at 3051.260 kb on + strand at 3051.279 kb on + strand at 3051.287 kb on - strand at 3051.287 kb on - strand at 3051.300 kb on - strand at 3051.461 kb on + strand, within DvMF_2412 at 3051.510 kb on - strand, within DvMF_2412 at 3051.537 kb on - strand, within DvMF_2412 at 3051.578 kb on - strand, within DvMF_2412 at 3051.666 kb on + strand, within DvMF_2412 at 3051.736 kb on - strand, within DvMF_2412 at 3051.972 kb on - strand, within DvMF_2412 at 3051.990 kb on + strand, within DvMF_2412 at 3052.454 kb on + strand, within DvMF_2413 at 3052.489 kb on + strand, within DvMF_2413 at 3052.542 kb on + strand, within DvMF_2413 at 3052.558 kb on + strand, within DvMF_2413 at 3052.922 kb on - strand, within DvMF_2413 at 3052.927 kb on + strand, within DvMF_2413 at 3053.043 kb on + strand at 3053.089 kb on - strand at 3053.098 kb on - strand at 3053.213 kb on + strand, within DvMF_2414 at 3053.213 kb on + strand, within DvMF_2414 at 3053.239 kb on - strand, within DvMF_2414
Per-strain Table
Position Strand Gene LocusTag Fraction L-Methionine as nutrient remove 3,050,269 - DvMF_2411 0.32 +0.6 3,050,295 + DvMF_2411 0.34 +1.1 3,050,460 + DvMF_2411 0.47 -0.1 3,050,542 + DvMF_2411 0.53 -0.3 3,050,696 + DvMF_2411 0.64 +0.5 3,050,910 + DvMF_2411 0.80 +0.4 3,051,112 - +0.3 3,051,260 + +0.4 3,051,279 + +0.7 3,051,287 - +0.1 3,051,287 - +0.6 3,051,300 - +0.3 3,051,461 + DvMF_2412 0.22 +0.6 3,051,510 - DvMF_2412 0.27 +0.2 3,051,537 - DvMF_2412 0.29 +0.4 3,051,578 - DvMF_2412 0.33 +0.9 3,051,666 + DvMF_2412 0.42 +0.9 3,051,736 - DvMF_2412 0.48 +0.6 3,051,972 - DvMF_2412 0.71 +1.7 3,051,990 + DvMF_2412 0.73 +0.4 3,052,454 + DvMF_2413 0.21 +0.6 3,052,489 + DvMF_2413 0.25 +1.1 3,052,542 + DvMF_2413 0.31 +0.6 3,052,558 + DvMF_2413 0.33 +0.6 3,052,922 - DvMF_2413 0.77 +0.3 3,052,927 + DvMF_2413 0.77 +0.7 3,053,043 + +0.1 3,053,089 - +0.6 3,053,098 - +0.4 3,053,213 + DvMF_2414 0.34 +0.8 3,053,213 + DvMF_2414 0.34 +0.1 3,053,239 - DvMF_2414 0.44 +0.1
Or see this region's nucleotide sequence