Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2412

Experiment: L-Methionine as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2411 and DvMF_2412 are separated by 60 nucleotidesDvMF_2412 and DvMF_2413 are separated by 6 nucleotidesDvMF_2413 and DvMF_2414 are separated by 7 nucleotides DvMF_2411: DvMF_2411 - sigma54 specific transcriptional regulator, Fis family (RefSeq), at 3,049,838 to 3,051,172 _2411 DvMF_2412: DvMF_2412 - type III secretion protein, YscU/HrpY family (RefSeq), at 3,051,233 to 3,052,273 _2412 DvMF_2413: DvMF_2413 - type III secretion protein SpaR/YscT/HrcT (RefSeq), at 3,052,280 to 3,053,116 _2413 DvMF_2414: DvMF_2414 - type III secretion protein, HrpO family (RefSeq), at 3,053,124 to 3,053,384 _2414 Position (kb) 3051 3052 3053Strain fitness (log2 ratio) -1 0 1at 3050.269 kb on - strand, within DvMF_2411at 3050.295 kb on + strand, within DvMF_2411at 3050.460 kb on + strand, within DvMF_2411at 3050.542 kb on + strand, within DvMF_2411at 3050.696 kb on + strand, within DvMF_2411at 3050.910 kb on + strand, within DvMF_2411at 3051.112 kb on - strandat 3051.260 kb on + strandat 3051.279 kb on + strandat 3051.287 kb on - strandat 3051.287 kb on - strandat 3051.300 kb on - strandat 3051.461 kb on + strand, within DvMF_2412at 3051.510 kb on - strand, within DvMF_2412at 3051.537 kb on - strand, within DvMF_2412at 3051.578 kb on - strand, within DvMF_2412at 3051.666 kb on + strand, within DvMF_2412at 3051.736 kb on - strand, within DvMF_2412at 3051.972 kb on - strand, within DvMF_2412at 3051.990 kb on + strand, within DvMF_2412at 3052.454 kb on + strand, within DvMF_2413at 3052.489 kb on + strand, within DvMF_2413at 3052.542 kb on + strand, within DvMF_2413at 3052.558 kb on + strand, within DvMF_2413at 3052.922 kb on - strand, within DvMF_2413at 3052.927 kb on + strand, within DvMF_2413at 3053.043 kb on + strandat 3053.089 kb on - strandat 3053.098 kb on - strandat 3053.213 kb on + strand, within DvMF_2414at 3053.213 kb on + strand, within DvMF_2414at 3053.239 kb on - strand, within DvMF_2414

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine as nutrient
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3,050,269 - DvMF_2411 0.32 +0.6
3,050,295 + DvMF_2411 0.34 +1.1
3,050,460 + DvMF_2411 0.47 -0.1
3,050,542 + DvMF_2411 0.53 -0.3
3,050,696 + DvMF_2411 0.64 +0.5
3,050,910 + DvMF_2411 0.80 +0.4
3,051,112 - +0.3
3,051,260 + +0.4
3,051,279 + +0.7
3,051,287 - +0.1
3,051,287 - +0.6
3,051,300 - +0.3
3,051,461 + DvMF_2412 0.22 +0.6
3,051,510 - DvMF_2412 0.27 +0.2
3,051,537 - DvMF_2412 0.29 +0.4
3,051,578 - DvMF_2412 0.33 +0.9
3,051,666 + DvMF_2412 0.42 +0.9
3,051,736 - DvMF_2412 0.48 +0.6
3,051,972 - DvMF_2412 0.71 +1.7
3,051,990 + DvMF_2412 0.73 +0.4
3,052,454 + DvMF_2413 0.21 +0.6
3,052,489 + DvMF_2413 0.25 +1.1
3,052,542 + DvMF_2413 0.31 +0.6
3,052,558 + DvMF_2413 0.33 +0.6
3,052,922 - DvMF_2413 0.77 +0.3
3,052,927 + DvMF_2413 0.77 +0.7
3,053,043 + +0.1
3,053,089 - +0.6
3,053,098 - +0.4
3,053,213 + DvMF_2414 0.34 +0.8
3,053,213 + DvMF_2414 0.34 +0.1
3,053,239 - DvMF_2414 0.44 +0.1

Or see this region's nucleotide sequence