Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1997

Experiment: L-Methionine as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1996 and DvMF_1997 are separated by 350 nucleotidesDvMF_1997 and DvMF_1998 are separated by 118 nucleotidesDvMF_1998 and DvMF_1999 overlap by 8 nucleotides DvMF_1996: DvMF_1996 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,473,689 to 2,475,722 _1996 DvMF_1997: DvMF_1997 - hypothetical protein (RefSeq), at 2,476,073 to 2,477,323 _1997 DvMF_1998: DvMF_1998 - hypothetical protein (RefSeq), at 2,477,442 to 2,477,903 _1998 DvMF_1999: DvMF_1999 - protein of unknown function DUF112 transmembrane (RefSeq), at 2,477,896 to 2,479,440 _1999 Position (kb) 2476 2477 2478Strain fitness (log2 ratio) -1 0 1at 2475.195 kb on + strand, within DvMF_1996at 2475.728 kb on - strandat 2475.751 kb on + strandat 2475.761 kb on - strandat 2475.906 kb on + strandat 2475.909 kb on - strandat 2475.914 kb on - strandat 2476.143 kb on + strandat 2476.351 kb on + strand, within DvMF_1997at 2476.423 kb on + strand, within DvMF_1997at 2476.428 kb on + strand, within DvMF_1997at 2476.433 kb on + strand, within DvMF_1997at 2476.621 kb on - strand, within DvMF_1997at 2476.683 kb on + strand, within DvMF_1997at 2476.691 kb on - strand, within DvMF_1997at 2476.849 kb on - strand, within DvMF_1997at 2476.881 kb on - strand, within DvMF_1997at 2477.276 kb on - strandat 2477.295 kb on - strandat 2477.420 kb on + strandat 2477.579 kb on - strand, within DvMF_1998at 2477.603 kb on + strand, within DvMF_1998at 2477.682 kb on + strand, within DvMF_1998at 2477.749 kb on - strand, within DvMF_1998at 2477.749 kb on - strand, within DvMF_1998at 2477.764 kb on - strand, within DvMF_1998at 2477.815 kb on - strand, within DvMF_1998at 2477.923 kb on - strandat 2478.274 kb on + strand, within DvMF_1999

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine as nutrient
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2,475,195 + DvMF_1996 0.74 +0.1
2,475,728 - +0.5
2,475,751 + +0.7
2,475,761 - +1.0
2,475,906 + -0.3
2,475,909 - +0.3
2,475,914 - +0.9
2,476,143 + +0.6
2,476,351 + DvMF_1997 0.22 +0.3
2,476,423 + DvMF_1997 0.28 +0.4
2,476,428 + DvMF_1997 0.28 +0.6
2,476,433 + DvMF_1997 0.29 +1.6
2,476,621 - DvMF_1997 0.44 +0.1
2,476,683 + DvMF_1997 0.49 +0.7
2,476,691 - DvMF_1997 0.49 +0.2
2,476,849 - DvMF_1997 0.62 +0.2
2,476,881 - DvMF_1997 0.65 +1.2
2,477,276 - +0.9
2,477,295 - +0.1
2,477,420 + +0.2
2,477,579 - DvMF_1998 0.30 +0.6
2,477,603 + DvMF_1998 0.35 +0.0
2,477,682 + DvMF_1998 0.52 +0.2
2,477,749 - DvMF_1998 0.66 +0.4
2,477,749 - DvMF_1998 0.66 +0.4
2,477,764 - DvMF_1998 0.70 +0.7
2,477,815 - DvMF_1998 0.81 +0.4
2,477,923 - +0.9
2,478,274 + DvMF_1999 0.24 +0.4

Or see this region's nucleotide sequence