Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1986

Experiment: L-Methionine as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1985 and DvMF_1986 are separated by 377 nucleotidesDvMF_1986 and DvMF_1987 are separated by 373 nucleotides DvMF_1985: DvMF_1985 - hypothetical protein (RefSeq), at 2,457,073 to 2,457,792 _1985 DvMF_1986: DvMF_1986 - Superoxide dismutase (RefSeq), at 2,458,170 to 2,458,886 _1986 DvMF_1987: DvMF_1987 - Pyruvate, water dikinase (RefSeq), at 2,459,260 to 2,462,016 _1987 Position (kb) 2458 2459Strain fitness (log2 ratio) -1 0 1 2at 2457.228 kb on + strand, within DvMF_1985at 2457.267 kb on - strand, within DvMF_1985at 2457.303 kb on + strand, within DvMF_1985at 2457.319 kb on - strand, within DvMF_1985at 2457.399 kb on - strand, within DvMF_1985at 2457.445 kb on + strand, within DvMF_1985at 2457.495 kb on - strand, within DvMF_1985at 2457.738 kb on + strandat 2457.738 kb on + strandat 2457.746 kb on + strandat 2457.830 kb on + strandat 2457.863 kb on + strandat 2458.011 kb on + strandat 2458.257 kb on + strand, within DvMF_1986at 2458.498 kb on - strand, within DvMF_1986at 2458.516 kb on - strand, within DvMF_1986at 2458.529 kb on - strand, within DvMF_1986at 2458.530 kb on - strand, within DvMF_1986at 2458.746 kb on + strand, within DvMF_1986at 2458.940 kb on + strandat 2458.985 kb on + strandat 2459.120 kb on + strandat 2459.357 kb on + strandat 2459.444 kb on + strandat 2459.592 kb on - strand, within DvMF_1987at 2459.594 kb on + strand, within DvMF_1987at 2459.602 kb on - strand, within DvMF_1987at 2459.602 kb on - strand, within DvMF_1987at 2459.770 kb on - strand, within DvMF_1987

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine as nutrient
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2,457,228 + DvMF_1985 0.22 -0.1
2,457,267 - DvMF_1985 0.27 +0.0
2,457,303 + DvMF_1985 0.32 +1.1
2,457,319 - DvMF_1985 0.34 +1.0
2,457,399 - DvMF_1985 0.45 +0.2
2,457,445 + DvMF_1985 0.52 +1.0
2,457,495 - DvMF_1985 0.59 +0.0
2,457,738 + +0.0
2,457,738 + +0.0
2,457,746 + +2.6
2,457,830 + +0.8
2,457,863 + +0.5
2,458,011 + +0.5
2,458,257 + DvMF_1986 0.12 +0.7
2,458,498 - DvMF_1986 0.46 +0.5
2,458,516 - DvMF_1986 0.48 +0.6
2,458,529 - DvMF_1986 0.50 +0.3
2,458,530 - DvMF_1986 0.50 +1.6
2,458,746 + DvMF_1986 0.80 +0.7
2,458,940 + +0.5
2,458,985 + +1.7
2,459,120 + +0.4
2,459,357 + +0.9
2,459,444 + +1.7
2,459,592 - DvMF_1987 0.12 +1.4
2,459,594 + DvMF_1987 0.12 +0.0
2,459,602 - DvMF_1987 0.12 +0.7
2,459,602 - DvMF_1987 0.12 +1.2
2,459,770 - DvMF_1987 0.18 +1.4

Or see this region's nucleotide sequence