Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1326

Experiment: L-Methionine as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1325 and DvMF_1326 are separated by 236 nucleotidesDvMF_1326 and DvMF_1327 are separated by 362 nucleotides DvMF_1325: DvMF_1325 - TPR repeat-containing protein (RefSeq), at 1,617,695 to 1,621,063 _1325 DvMF_1326: DvMF_1326 - protein of unknown function DUF52 (RefSeq), at 1,621,300 to 1,622,148 _1326 DvMF_1327: DvMF_1327 - hypothetical protein (RefSeq), at 1,622,511 to 1,623,554 _1327 Position (kb) 1621 1622 1623Strain fitness (log2 ratio) -1 0 1 2at 1620.380 kb on - strand, within DvMF_1325at 1620.551 kb on - strand, within DvMF_1325at 1620.661 kb on - strand, within DvMF_1325at 1620.886 kb on - strandat 1621.011 kb on + strandat 1621.065 kb on - strandat 1621.208 kb on + strandat 1621.271 kb on - strandat 1621.444 kb on - strand, within DvMF_1326at 1621.510 kb on - strand, within DvMF_1326at 1621.539 kb on + strand, within DvMF_1326at 1621.547 kb on - strand, within DvMF_1326at 1621.706 kb on + strand, within DvMF_1326at 1621.714 kb on - strand, within DvMF_1326at 1621.714 kb on - strand, within DvMF_1326at 1621.714 kb on - strand, within DvMF_1326at 1621.750 kb on - strand, within DvMF_1326at 1621.785 kb on + strand, within DvMF_1326at 1621.835 kb on + strand, within DvMF_1326at 1621.958 kb on - strand, within DvMF_1326at 1622.028 kb on + strand, within DvMF_1326at 1622.222 kb on - strandat 1622.288 kb on + strandat 1622.363 kb on - strandat 1623.040 kb on + strand, within DvMF_1327

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine as nutrient
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1,620,380 - DvMF_1325 0.80 +1.6
1,620,551 - DvMF_1325 0.85 +1.4
1,620,661 - DvMF_1325 0.88 +1.9
1,620,886 - +1.2
1,621,011 + +0.3
1,621,065 - +0.1
1,621,208 + +0.4
1,621,271 - +0.8
1,621,444 - DvMF_1326 0.17 +0.5
1,621,510 - DvMF_1326 0.25 +0.6
1,621,539 + DvMF_1326 0.28 +0.4
1,621,547 - DvMF_1326 0.29 +1.4
1,621,706 + DvMF_1326 0.48 +1.5
1,621,714 - DvMF_1326 0.49 +0.4
1,621,714 - DvMF_1326 0.49 -0.3
1,621,714 - DvMF_1326 0.49 +0.2
1,621,750 - DvMF_1326 0.53 -0.6
1,621,785 + DvMF_1326 0.57 +0.1
1,621,835 + DvMF_1326 0.63 +0.5
1,621,958 - DvMF_1326 0.78 +0.5
1,622,028 + DvMF_1326 0.86 +0.1
1,622,222 - -0.3
1,622,288 + +0.6
1,622,363 - +0.6
1,623,040 + DvMF_1327 0.51 +0.3

Or see this region's nucleotide sequence