Experiment: L-Methionine as nutrient
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1058 and DvMF_1059 are separated by 509 nucleotides DvMF_1059 and DvMF_1060 are separated by 280 nucleotides
DvMF_1058: DvMF_1058 - putative ABC transporter ATP-binding protein (RefSeq), at 1,296,131 to 1,297,813
_1058
DvMF_1059: DvMF_1059 - putative PAS/PAC sensor protein (RefSeq), at 1,298,323 to 1,299,933
_1059
DvMF_1060: DvMF_1060 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 1,300,214 to 1,302,235
_1060
Position (kb)
1298
1299
1300 Strain fitness (log2 ratio)
-1
0
1
2 at 1297.595 kb on + strand, within DvMF_1058 at 1297.615 kb on + strand, within DvMF_1058 at 1297.973 kb on - strand at 1297.979 kb on + strand at 1298.141 kb on - strand at 1298.158 kb on + strand at 1298.166 kb on - strand at 1298.207 kb on + strand at 1298.370 kb on + strand at 1298.504 kb on + strand, within DvMF_1059 at 1298.985 kb on + strand, within DvMF_1059 at 1299.240 kb on + strand, within DvMF_1059 at 1299.240 kb on + strand, within DvMF_1059 at 1299.240 kb on + strand, within DvMF_1059 at 1299.248 kb on - strand, within DvMF_1059 at 1299.248 kb on - strand, within DvMF_1059 at 1299.248 kb on - strand, within DvMF_1059 at 1299.248 kb on - strand, within DvMF_1059 at 1299.248 kb on - strand, within DvMF_1059 at 1299.248 kb on - strand, within DvMF_1059 at 1299.333 kb on + strand, within DvMF_1059 at 1299.760 kb on + strand, within DvMF_1059 at 1299.860 kb on + strand at 1299.930 kb on - strand at 1299.952 kb on - strand at 1300.019 kb on + strand at 1300.104 kb on - strand at 1300.270 kb on + strand at 1300.417 kb on + strand, within DvMF_1060 at 1300.484 kb on - strand, within DvMF_1060 at 1300.498 kb on - strand, within DvMF_1060 at 1300.559 kb on + strand, within DvMF_1060 at 1300.846 kb on + strand, within DvMF_1060 at 1300.849 kb on - strand, within DvMF_1060 at 1300.851 kb on + strand, within DvMF_1060
Per-strain Table
Position Strand Gene LocusTag Fraction L-Methionine as nutrient remove 1,297,595 + DvMF_1058 0.87 +0.9 1,297,615 + DvMF_1058 0.88 +1.3 1,297,973 - +0.1 1,297,979 + +0.5 1,298,141 - -0.0 1,298,158 + +0.9 1,298,166 - +0.3 1,298,207 + -0.0 1,298,370 + +0.4 1,298,504 + DvMF_1059 0.11 +2.6 1,298,985 + DvMF_1059 0.41 -0.0 1,299,240 + DvMF_1059 0.57 +0.4 1,299,240 + DvMF_1059 0.57 +0.2 1,299,240 + DvMF_1059 0.57 +1.2 1,299,248 - DvMF_1059 0.57 -0.9 1,299,248 - DvMF_1059 0.57 +0.2 1,299,248 - DvMF_1059 0.57 -0.7 1,299,248 - DvMF_1059 0.57 -0.1 1,299,248 - DvMF_1059 0.57 -0.3 1,299,248 - DvMF_1059 0.57 -0.0 1,299,333 + DvMF_1059 0.63 -0.3 1,299,760 + DvMF_1059 0.89 -0.2 1,299,860 + +0.1 1,299,930 - +0.1 1,299,952 - +0.7 1,300,019 + -0.6 1,300,104 - +0.3 1,300,270 + +0.1 1,300,417 + DvMF_1060 0.10 +0.3 1,300,484 - DvMF_1060 0.13 +0.3 1,300,498 - DvMF_1060 0.14 +0.3 1,300,559 + DvMF_1060 0.17 +0.4 1,300,846 + DvMF_1060 0.31 +0.1 1,300,849 - DvMF_1060 0.31 +0.2 1,300,851 + DvMF_1060 0.32 +0.3
Or see this region's nucleotide sequence