Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0925

Experiment: L-Methionine as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0924 and DvMF_0925 are separated by 205 nucleotidesDvMF_0925 and DvMF_0926 are separated by 246 nucleotides DvMF_0924: DvMF_0924 - hypothetical protein (RefSeq), at 1,117,468 to 1,119,033 _0924 DvMF_0925: DvMF_0925 - ribonuclease R (RefSeq), at 1,119,239 to 1,122,352 _0925 DvMF_0926: DvMF_0926 - tetraacyldisaccharide 4'-kinase (RefSeq), at 1,122,599 to 1,123,717 _0926 Position (kb) 1119 1120 1121 1122 1123Strain fitness (log2 ratio) -1 0 1at 1118.433 kb on + strand, within DvMF_0924at 1118.433 kb on + strand, within DvMF_0924at 1118.501 kb on + strand, within DvMF_0924at 1118.668 kb on + strand, within DvMF_0924at 1119.068 kb on + strandat 1119.076 kb on - strandat 1119.215 kb on - strandat 1119.301 kb on + strandat 1119.566 kb on + strand, within DvMF_0925at 1119.603 kb on + strand, within DvMF_0925at 1119.611 kb on - strand, within DvMF_0925at 1120.280 kb on - strand, within DvMF_0925at 1120.280 kb on - strand, within DvMF_0925at 1120.974 kb on + strand, within DvMF_0925at 1121.213 kb on - strand, within DvMF_0925at 1122.085 kb on - strandat 1122.123 kb on + strandat 1122.243 kb on - strandat 1122.464 kb on + strandat 1122.468 kb on + strandat 1122.495 kb on + strandat 1122.576 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine as nutrient
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1,118,433 + DvMF_0924 0.62 +0.6
1,118,433 + DvMF_0924 0.62 +0.3
1,118,501 + DvMF_0924 0.66 -0.3
1,118,668 + DvMF_0924 0.77 -0.1
1,119,068 + +0.5
1,119,076 - +0.2
1,119,215 - +0.3
1,119,301 + +0.8
1,119,566 + DvMF_0925 0.11 -0.3
1,119,603 + DvMF_0925 0.12 +0.3
1,119,611 - DvMF_0925 0.12 +0.7
1,120,280 - DvMF_0925 0.33 -0.2
1,120,280 - DvMF_0925 0.33 +0.7
1,120,974 + DvMF_0925 0.56 +0.0
1,121,213 - DvMF_0925 0.63 +0.2
1,122,085 - +0.1
1,122,123 + +0.6
1,122,243 - +0.9
1,122,464 + -0.6
1,122,468 + +0.1
1,122,495 + -0.2
1,122,576 - -0.2

Or see this region's nucleotide sequence