Experiment: L-Methionine as nutrient
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0669 and DvMF_0670 are separated by 74 nucleotides DvMF_0670 and DvMF_0671 overlap by 26 nucleotides DvMF_0671 and DvMF_0672 are separated by 6 nucleotides
DvMF_0669: DvMF_0669 - hypothetical protein (RefSeq), at 807,347 to 809,689
_0669
DvMF_0670: DvMF_0670 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 809,764 to 811,125
_0670
DvMF_0671: DvMF_0671 - EpsI family protein (RefSeq), at 811,100 to 811,831
_0671
DvMF_0672: DvMF_0672 - eight transmembrane protein EpsH (RefSeq), at 811,838 to 812,692
_0672
Position (kb) 809
810
811
812 Strain fitness (log2 ratio) -1
0
1
2 at 808.770 kb on + strand, within DvMF_0669 at 808.775 kb on + strand, within DvMF_0669 at 808.783 kb on - strand, within DvMF_0669 at 808.853 kb on - strand, within DvMF_0669 at 808.918 kb on - strand, within DvMF_0669 at 809.360 kb on + strand, within DvMF_0669 at 809.777 kb on - strand at 809.989 kb on + strand, within DvMF_0670 at 810.371 kb on + strand, within DvMF_0670 at 810.508 kb on + strand, within DvMF_0670 at 810.549 kb on - strand, within DvMF_0670 at 810.558 kb on + strand, within DvMF_0670 at 810.566 kb on - strand, within DvMF_0670 at 810.789 kb on + strand, within DvMF_0670 at 811.003 kb on + strand at 811.080 kb on - strand at 811.588 kb on - strand, within DvMF_0671 at 811.690 kb on + strand, within DvMF_0671 at 811.700 kb on + strand, within DvMF_0671 at 811.826 kb on - strand at 811.834 kb on + strand at 811.879 kb on - strand at 811.896 kb on - strand at 811.909 kb on - strand at 812.104 kb on + strand, within DvMF_0672
Per-strain Table
Position Strand Gene LocusTag Fraction L-Methionine as nutrient remove 808,770 + DvMF_0669 0.61 -0.0 808,775 + DvMF_0669 0.61 -0.3 808,783 - DvMF_0669 0.61 -1.1 808,853 - DvMF_0669 0.64 +1.1 808,918 - DvMF_0669 0.67 +0.0 809,360 + DvMF_0669 0.86 +0.4 809,777 - +1.0 809,989 + DvMF_0670 0.17 -0.6 810,371 + DvMF_0670 0.45 -0.5 810,508 + DvMF_0670 0.55 -0.1 810,549 - DvMF_0670 0.58 +0.7 810,558 + DvMF_0670 0.58 +0.1 810,566 - DvMF_0670 0.59 +0.5 810,789 + DvMF_0670 0.75 -0.0 811,003 + +0.8 811,080 - +0.1 811,588 - DvMF_0671 0.67 +2.0 811,690 + DvMF_0671 0.81 +0.1 811,700 + DvMF_0671 0.82 +0.4 811,826 - -1.0 811,834 + +1.6 811,879 - +0.3 811,896 - +0.1 811,909 - +0.3 812,104 + DvMF_0672 0.31 -0.0
Or see this region's nucleotide sequence