Experiment: L-Methionine as nutrient
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0210 and DvMF_0211 overlap by 4 nucleotides DvMF_0211 and DvMF_0212 are separated by 92 nucleotides
DvMF_0210: DvMF_0210 - Extracellular ligand-binding receptor (RefSeq), at 230,566 to 232,344
_0210
DvMF_0211: DvMF_0211 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 232,341 to 235,571
_0211
DvMF_0212: DvMF_0212 - hypothetical protein (RefSeq), at 235,664 to 239,317
_0212
Position (kb) 232
233
234
235
236 Strain fitness (log2 ratio) -1
0
1 at 231.628 kb on + strand, within DvMF_0210 at 231.717 kb on - strand, within DvMF_0210 at 231.901 kb on - strand, within DvMF_0210 at 231.929 kb on + strand, within DvMF_0210 at 231.983 kb on - strand, within DvMF_0210 at 232.610 kb on + strand at 232.631 kb on - strand at 232.768 kb on - strand, within DvMF_0211 at 232.864 kb on + strand, within DvMF_0211 at 232.929 kb on + strand, within DvMF_0211 at 232.942 kb on - strand, within DvMF_0211 at 233.019 kb on - strand, within DvMF_0211 at 233.106 kb on + strand, within DvMF_0211 at 233.134 kb on + strand, within DvMF_0211 at 233.147 kb on - strand, within DvMF_0211 at 233.170 kb on - strand, within DvMF_0211 at 233.218 kb on + strand, within DvMF_0211 at 233.226 kb on - strand, within DvMF_0211 at 233.389 kb on - strand, within DvMF_0211 at 233.461 kb on + strand, within DvMF_0211 at 233.537 kb on - strand, within DvMF_0211 at 233.577 kb on + strand, within DvMF_0211 at 234.252 kb on - strand, within DvMF_0211 at 234.303 kb on + strand, within DvMF_0211 at 234.390 kb on - strand, within DvMF_0211 at 234.430 kb on + strand, within DvMF_0211 at 234.644 kb on - strand, within DvMF_0211 at 234.644 kb on - strand, within DvMF_0211 at 234.649 kb on - strand, within DvMF_0211 at 234.681 kb on + strand, within DvMF_0211 at 234.681 kb on + strand, within DvMF_0211 at 234.681 kb on + strand, within DvMF_0211 at 234.681 kb on + strand, within DvMF_0211 at 234.689 kb on - strand, within DvMF_0211 at 234.689 kb on - strand, within DvMF_0211 at 234.867 kb on - strand, within DvMF_0211 at 235.074 kb on + strand, within DvMF_0211 at 235.738 kb on - strand at 236.314 kb on - strand, within DvMF_0212 at 236.466 kb on + strand, within DvMF_0212 at 236.519 kb on + strand, within DvMF_0212 at 236.564 kb on + strand, within DvMF_0212
Per-strain Table
Position Strand Gene LocusTag Fraction L-Methionine as nutrient remove 231,628 + DvMF_0210 0.60 +0.6 231,717 - DvMF_0210 0.65 +0.6 231,901 - DvMF_0210 0.75 +0.5 231,929 + DvMF_0210 0.77 +0.9 231,983 - DvMF_0210 0.80 +0.8 232,610 + +1.1 232,631 - -0.4 232,768 - DvMF_0211 0.13 +0.1 232,864 + DvMF_0211 0.16 +0.0 232,929 + DvMF_0211 0.18 +0.6 232,942 - DvMF_0211 0.19 +0.4 233,019 - DvMF_0211 0.21 +1.5 233,106 + DvMF_0211 0.24 +0.6 233,134 + DvMF_0211 0.25 +0.5 233,147 - DvMF_0211 0.25 +0.9 233,170 - DvMF_0211 0.26 +1.7 233,218 + DvMF_0211 0.27 +0.7 233,226 - DvMF_0211 0.27 +0.3 233,389 - DvMF_0211 0.32 +1.1 233,461 + DvMF_0211 0.35 +0.4 233,537 - DvMF_0211 0.37 +1.0 233,577 + DvMF_0211 0.38 +0.6 234,252 - DvMF_0211 0.59 +0.3 234,303 + DvMF_0211 0.61 +0.7 234,390 - DvMF_0211 0.63 +0.8 234,430 + DvMF_0211 0.65 +0.2 234,644 - DvMF_0211 0.71 +1.0 234,644 - DvMF_0211 0.71 +0.4 234,649 - DvMF_0211 0.71 +1.3 234,681 + DvMF_0211 0.72 +1.2 234,681 + DvMF_0211 0.72 +0.4 234,681 + DvMF_0211 0.72 -0.8 234,681 + DvMF_0211 0.72 +0.4 234,689 - DvMF_0211 0.73 +0.2 234,689 - DvMF_0211 0.73 +0.8 234,867 - DvMF_0211 0.78 -0.7 235,074 + DvMF_0211 0.85 +1.2 235,738 - -0.5 236,314 - DvMF_0212 0.18 -0.5 236,466 + DvMF_0212 0.22 +0.7 236,519 + DvMF_0212 0.23 +0.1 236,564 + DvMF_0212 0.25 +0.2
Or see this region's nucleotide sequence