Experiment: L-Methionine as nutrient
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0166 and DvMF_0167 are separated by 135 nucleotides DvMF_0167 and DvMF_0168 are separated by 520 nucleotides
DvMF_0166: DvMF_0166 - Formate dehydrogenase (RefSeq), at 180,349 to 182,484
_0166
DvMF_0167: DvMF_0167 - RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq), at 182,620 to 184,020
_0167
DvMF_0168: DvMF_0168 - hypothetical protein (RefSeq), at 184,541 to 185,011
_0168
Position (kb) 182
183
184
185 Strain fitness (log2 ratio) -1
0
1
2 at 181.697 kb on + strand, within DvMF_0166 at 181.705 kb on - strand, within DvMF_0166 at 181.850 kb on - strand, within DvMF_0166 at 181.850 kb on - strand, within DvMF_0166 at 181.871 kb on + strand, within DvMF_0166 at 181.997 kb on + strand, within DvMF_0166 at 181.999 kb on + strand, within DvMF_0166 at 182.054 kb on - strand, within DvMF_0166 at 182.427 kb on - strand at 182.438 kb on + strand at 182.438 kb on + strand at 182.546 kb on + strand at 182.554 kb on - strand at 182.818 kb on + strand, within DvMF_0167 at 182.913 kb on - strand, within DvMF_0167 at 182.972 kb on - strand, within DvMF_0167 at 182.982 kb on - strand, within DvMF_0167 at 183.014 kb on - strand, within DvMF_0167 at 183.032 kb on - strand, within DvMF_0167 at 183.214 kb on + strand, within DvMF_0167 at 183.261 kb on - strand, within DvMF_0167 at 183.437 kb on - strand, within DvMF_0167 at 183.536 kb on + strand, within DvMF_0167 at 184.221 kb on + strand at 184.221 kb on + strand at 184.290 kb on - strand at 184.351 kb on + strand at 184.351 kb on + strand at 184.351 kb on + strand at 184.373 kb on - strand at 184.542 kb on - strand at 184.695 kb on + strand, within DvMF_0168 at 184.857 kb on + strand, within DvMF_0168 at 184.862 kb on + strand, within DvMF_0168
Per-strain Table
Position Strand Gene LocusTag Fraction L-Methionine as nutrient remove 181,697 + DvMF_0166 0.63 +2.4 181,705 - DvMF_0166 0.63 +0.3 181,850 - DvMF_0166 0.70 +0.4 181,850 - DvMF_0166 0.70 +0.2 181,871 + DvMF_0166 0.71 -0.8 181,997 + DvMF_0166 0.77 +0.4 181,999 + DvMF_0166 0.77 +0.4 182,054 - DvMF_0166 0.80 -0.8 182,427 - -0.9 182,438 + +0.3 182,438 + +0.9 182,546 + +0.2 182,554 - +0.3 182,818 + DvMF_0167 0.14 +0.6 182,913 - DvMF_0167 0.21 +0.6 182,972 - DvMF_0167 0.25 +0.5 182,982 - DvMF_0167 0.26 +2.0 183,014 - DvMF_0167 0.28 +0.4 183,032 - DvMF_0167 0.29 +0.9 183,214 + DvMF_0167 0.42 +0.4 183,261 - DvMF_0167 0.46 +1.6 183,437 - DvMF_0167 0.58 +0.7 183,536 + DvMF_0167 0.65 +1.3 184,221 + +1.1 184,221 + +0.3 184,290 - +0.8 184,351 + +0.5 184,351 + -0.1 184,351 + +0.3 184,373 - +0.5 184,542 - +1.2 184,695 + DvMF_0168 0.33 +0.8 184,857 + DvMF_0168 0.67 +1.6 184,862 + DvMF_0168 0.68 +0.2
Or see this region's nucleotide sequence