Experiment: L-Methionine as nutrient
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0156 and DvMF_0157 are separated by 434 nucleotides DvMF_0157 and DvMF_0158 are separated by 213 nucleotides DvMF_0158 and DvMF_0159 are separated by 247 nucleotides
DvMF_0156: DvMF_0156 - NADPH-dependent FMN reductase (RefSeq), at 171,170 to 171,736
_0156
DvMF_0157: DvMF_0157 - hypothetical protein (RefSeq), at 172,171 to 172,386
_0157
DvMF_0158: DvMF_0158 - HesB-like domain-containing protein (RefSeq), at 172,600 to 172,920
_0158
DvMF_0159: DvMF_0159 - HesB-like domain-containing protein (RefSeq), at 173,168 to 173,461
_0159
Position (kb) 172
173 Strain fitness (log2 ratio) -1
0
1 at 171.472 kb on + strand, within DvMF_0156 at 171.732 kb on - strand at 171.786 kb on + strand at 171.987 kb on - strand at 172.020 kb on + strand at 172.196 kb on + strand, within DvMF_0157 at 172.222 kb on + strand, within DvMF_0157 at 172.553 kb on + strand at 172.781 kb on + strand, within DvMF_0158 at 172.995 kb on + strand at 173.018 kb on - strand at 173.028 kb on + strand at 173.235 kb on + strand, within DvMF_0159 at 173.295 kb on + strand, within DvMF_0159
Per-strain Table
Position Strand Gene LocusTag Fraction L-Methionine as nutrient remove 171,472 + DvMF_0156 0.53 +0.6 171,732 - -0.7 171,786 + +0.1 171,987 - -0.5 172,020 + +0.1 172,196 + DvMF_0157 0.12 -0.0 172,222 + DvMF_0157 0.24 -0.4 172,553 + +0.1 172,781 + DvMF_0158 0.56 +0.3 172,995 + -0.6 173,018 - +0.4 173,028 + +0.1 173,235 + DvMF_0159 0.23 +1.3 173,295 + DvMF_0159 0.43 -0.3
Or see this region's nucleotide sequence