Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3498

Experiment: m.b. Vancomycin 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3496 and Dshi_3498 are separated by 669 nucleotidesDshi_3498 and Dshi_3499 overlap by 8 nucleotidesDshi_3499 and Dshi_3500 are separated by 30 nucleotides Dshi_3496: Dshi_3496 - ErfK/YbiS/YcfS/YnhG family protein (RefSeq), at 3,677,660 to 3,678,262 _3496 Dshi_3498: Dshi_3498 - Ferrochelatase (RefSeq), at 3,678,932 to 3,680,020 _3498 Dshi_3499: Dshi_3499 - hypothetical protein (RefSeq), at 3,680,013 to 3,680,882 _3499 Dshi_3500: Dshi_3500 - competence protein F, putative (RefSeq), at 3,680,913 to 3,681,689 _3500 Position (kb) 3678 3679 3680 3681Strain fitness (log2 ratio) -2 -1 0 1at 3677.940 kb on - strand, within Dshi_3496at 3677.959 kb on - strand, within Dshi_3496at 3677.959 kb on - strand, within Dshi_3496at 3677.963 kb on + strand, within Dshi_3496at 3677.968 kb on + strand, within Dshi_3496at 3677.976 kb on - strand, within Dshi_3496at 3678.009 kb on - strand, within Dshi_3496at 3678.043 kb on - strand, within Dshi_3496at 3678.073 kb on + strand, within Dshi_3496at 3678.086 kb on - strand, within Dshi_3496at 3678.123 kb on - strand, within Dshi_3496at 3678.210 kb on + strandat 3678.225 kb on - strandat 3678.229 kb on + strandat 3678.237 kb on - strandat 3678.251 kb on + strandat 3678.251 kb on - strandat 3678.261 kb on + strandat 3678.264 kb on - strandat 3678.430 kb on - strandat 3678.432 kb on + strandat 3678.453 kb on + strandat 3678.461 kb on - strandat 3678.461 kb on - strandat 3678.461 kb on - strandat 3678.471 kb on + strandat 3678.897 kb on + strandat 3678.897 kb on + strandat 3678.897 kb on + strandat 3678.905 kb on - strandat 3678.905 kb on - strandat 3678.951 kb on - strandat 3678.983 kb on - strandat 3680.088 kb on - strandat 3680.088 kb on - strandat 3680.863 kb on + strandat 3680.863 kb on + strandat 3680.890 kb on + strandat 3680.895 kb on + strandat 3680.947 kb on + strandat 3680.957 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.064 mg/ml
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3,677,940 - Dshi_3496 0.46 -0.6
3,677,959 - Dshi_3496 0.50 -0.1
3,677,959 - Dshi_3496 0.50 -0.7
3,677,963 + Dshi_3496 0.50 -0.3
3,677,968 + Dshi_3496 0.51 -0.7
3,677,976 - Dshi_3496 0.52 -1.3
3,678,009 - Dshi_3496 0.58 +0.2
3,678,043 - Dshi_3496 0.64 -0.9
3,678,073 + Dshi_3496 0.68 +0.6
3,678,086 - Dshi_3496 0.71 -0.7
3,678,123 - Dshi_3496 0.77 -0.4
3,678,210 + -0.4
3,678,225 - -1.0
3,678,229 + -1.2
3,678,237 - -0.8
3,678,251 + +0.9
3,678,251 - -1.2
3,678,261 + +0.2
3,678,264 - -0.6
3,678,430 - -1.8
3,678,432 + -1.0
3,678,453 + -0.5
3,678,461 - -2.2
3,678,461 - -1.0
3,678,461 - -1.0
3,678,471 + +0.7
3,678,897 + -0.1
3,678,897 + -1.0
3,678,897 + -1.4
3,678,905 - +0.9
3,678,905 - -0.9
3,678,951 - -0.2
3,678,983 - +0.8
3,680,088 - -0.7
3,680,088 - -0.6
3,680,863 + -0.6
3,680,863 + +0.1
3,680,890 + +1.2
3,680,895 + +1.0
3,680,947 + +0.2
3,680,957 - +0.8

Or see this region's nucleotide sequence