Experiment: m.b. Vancomycin 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2863 and Dshi_2864 are separated by 2 nucleotides Dshi_2864 and Dshi_2865 are separated by 145 nucleotides Dshi_2865 and Dshi_2866 are separated by 16 nucleotides Dshi_2866 and Dshi_2867 are separated by 11 nucleotides
Dshi_2863: Dshi_2863 - hypothetical protein (RefSeq), at 3,019,899 to 3,020,720
_2863
Dshi_2864: Dshi_2864 - hypothetical protein (RefSeq), at 3,020,723 to 3,021,550
_2864
Dshi_2865: Dshi_2865 - succinate dehydrogenase, flavoprotein subunit (RefSeq), at 3,021,696 to 3,023,498
_2865
Dshi_2866: Dshi_2866 - Succinate dehydrogenase hydrophobic membrane anchor (RefSeq), at 3,023,515 to 3,023,886
_2866
Dshi_2867: Dshi_2867 - Succinate dehydrogenase cytochrome b556 subunit (RefSeq), at 3,023,898 to 3,024,281
_2867
Position (kb)
3021
3022
3023
3024 Strain fitness (log2 ratio)
-1
0
1 at 3020.737 kb on - strand at 3020.747 kb on - strand at 3020.881 kb on + strand, within Dshi_2864 at 3020.966 kb on - strand, within Dshi_2864 at 3021.118 kb on + strand, within Dshi_2864 at 3021.223 kb on - strand, within Dshi_2864 at 3021.429 kb on + strand, within Dshi_2864 at 3021.439 kb on - strand, within Dshi_2864 at 3021.492 kb on - strand at 3021.559 kb on + strand at 3021.559 kb on + strand at 3021.570 kb on + strand at 3021.608 kb on + strand at 3021.613 kb on + strand at 3021.613 kb on + strand at 3021.647 kb on - strand at 3021.666 kb on - strand at 3021.667 kb on - strand at 3024.467 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.064 mg/ml remove 3,020,737 - +0.6 3,020,747 - -0.2 3,020,881 + Dshi_2864 0.19 -0.3 3,020,966 - Dshi_2864 0.29 -0.5 3,021,118 + Dshi_2864 0.48 -1.2 3,021,223 - Dshi_2864 0.60 -1.2 3,021,429 + Dshi_2864 0.85 -1.1 3,021,439 - Dshi_2864 0.86 -1.3 3,021,492 - +0.1 3,021,559 + -0.6 3,021,559 + -0.5 3,021,570 + +0.2 3,021,608 + -1.3 3,021,613 + -0.6 3,021,613 + +0.3 3,021,647 - -0.5 3,021,666 - +0.5 3,021,667 - -0.5 3,024,467 - +0.4
Or see this region's nucleotide sequence