Experiment: m.b. Vancomycin 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2068 and Dshi_2069 are separated by 152 nucleotides Dshi_2069 and Dshi_2070 are separated by 114 nucleotides Dshi_2070 and Dshi_2071 are separated by 40 nucleotides Dshi_2071 and Dshi_2072 are separated by 14 nucleotides
Dshi_2068: Dshi_2068 - methylthioadenosine phosphorylase (RefSeq), at 2,189,203 to 2,190,072
_2068
Dshi_2069: Dshi_2069 - hypothetical protein (RefSeq), at 2,190,225 to 2,190,515
_2069
Dshi_2070: Dshi_2070 - Glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 2,190,630 to 2,191,025
_2070
Dshi_2071: Dshi_2071 - hypothetical protein (RefSeq), at 2,191,066 to 2,191,590
_2071
Dshi_2072: Dshi_2072 - Gluconate 2-dehydrogenase (acceptor) (RefSeq), at 2,191,605 to 2,193,176
_2072
Position (kb)
2190
2191
2192 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2189.630 kb on - strand, within Dshi_2068 at 2189.810 kb on + strand, within Dshi_2068 at 2189.892 kb on + strand, within Dshi_2068 at 2189.996 kb on - strand at 2190.067 kb on - strand at 2190.215 kb on + strand at 2190.265 kb on + strand, within Dshi_2069 at 2190.373 kb on - strand, within Dshi_2069 at 2190.431 kb on - strand, within Dshi_2069 at 2190.444 kb on + strand, within Dshi_2069 at 2190.462 kb on - strand, within Dshi_2069 at 2190.464 kb on + strand, within Dshi_2069 at 2190.464 kb on + strand, within Dshi_2069 at 2190.505 kb on - strand at 2190.579 kb on + strand at 2190.579 kb on + strand at 2190.585 kb on + strand at 2190.587 kb on - strand at 2190.587 kb on - strand at 2190.632 kb on + strand at 2190.635 kb on - strand at 2190.670 kb on + strand, within Dshi_2070 at 2190.785 kb on + strand, within Dshi_2070 at 2190.810 kb on + strand, within Dshi_2070 at 2190.895 kb on - strand, within Dshi_2070 at 2190.901 kb on + strand, within Dshi_2070 at 2190.988 kb on + strand at 2191.286 kb on - strand, within Dshi_2071 at 2191.300 kb on + strand, within Dshi_2071 at 2191.407 kb on - strand, within Dshi_2071 at 2191.407 kb on - strand, within Dshi_2071 at 2191.469 kb on - strand, within Dshi_2071 at 2191.493 kb on + strand, within Dshi_2071 at 2191.523 kb on - strand, within Dshi_2071 at 2191.553 kb on - strand at 2191.584 kb on + strand at 2191.751 kb on - strand at 2191.774 kb on + strand, within Dshi_2072 at 2191.818 kb on - strand, within Dshi_2072 at 2191.876 kb on - strand, within Dshi_2072 at 2191.897 kb on - strand, within Dshi_2072 at 2191.902 kb on - strand, within Dshi_2072 at 2191.944 kb on + strand, within Dshi_2072 at 2191.952 kb on - strand, within Dshi_2072 at 2192.001 kb on - strand, within Dshi_2072
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.064 mg/ml remove 2,189,630 - Dshi_2068 0.49 -0.6 2,189,810 + Dshi_2068 0.70 -0.1 2,189,892 + Dshi_2068 0.79 -2.8 2,189,996 - -0.6 2,190,067 - +0.1 2,190,215 + +0.6 2,190,265 + Dshi_2069 0.14 +0.3 2,190,373 - Dshi_2069 0.51 +0.5 2,190,431 - Dshi_2069 0.71 -0.4 2,190,444 + Dshi_2069 0.75 +0.6 2,190,462 - Dshi_2069 0.81 -2.1 2,190,464 + Dshi_2069 0.82 -0.4 2,190,464 + Dshi_2069 0.82 +0.9 2,190,505 - -0.1 2,190,579 + -0.0 2,190,579 + +0.3 2,190,585 + +1.0 2,190,587 - -1.6 2,190,587 - +0.0 2,190,632 + -0.3 2,190,635 - -0.5 2,190,670 + Dshi_2070 0.10 -0.5 2,190,785 + Dshi_2070 0.39 -0.8 2,190,810 + Dshi_2070 0.45 -2.7 2,190,895 - Dshi_2070 0.67 -0.9 2,190,901 + Dshi_2070 0.68 -0.8 2,190,988 + +0.5 2,191,286 - Dshi_2071 0.42 -0.7 2,191,300 + Dshi_2071 0.45 -0.8 2,191,407 - Dshi_2071 0.65 -1.4 2,191,407 - Dshi_2071 0.65 -1.4 2,191,469 - Dshi_2071 0.77 -0.5 2,191,493 + Dshi_2071 0.81 +0.9 2,191,523 - Dshi_2071 0.87 -0.8 2,191,553 - +0.4 2,191,584 + +0.0 2,191,751 - -0.5 2,191,774 + Dshi_2072 0.11 -0.1 2,191,818 - Dshi_2072 0.14 +0.6 2,191,876 - Dshi_2072 0.17 -0.3 2,191,897 - Dshi_2072 0.19 -0.1 2,191,902 - Dshi_2072 0.19 +0.9 2,191,944 + Dshi_2072 0.22 +0.7 2,191,952 - Dshi_2072 0.22 -0.5 2,192,001 - Dshi_2072 0.25 +0.2
Or see this region's nucleotide sequence