Experiment: m.b. Vancomycin 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1351 and Dshi_1352 overlap by 4 nucleotides Dshi_1352 and Dshi_1353 are separated by 651 nucleotides Dshi_1353 and Dshi_1354 are separated by 61 nucleotides
Dshi_1351: Dshi_1351 - hypothetical protein (RefSeq), at 1,403,285 to 1,403,677
_1351
Dshi_1352: Dshi_1352 - TfoX domain protein (RefSeq), at 1,403,674 to 1,404,003
_1352
Dshi_1353: Dshi_1353 - extracellular solute-binding protein family 1 (RefSeq), at 1,404,655 to 1,405,959
_1353
Dshi_1354: Dshi_1354 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,406,021 to 1,407,271
_1354
Position (kb)
1404
1405
1406 Strain fitness (log2 ratio)
-1
0
1 at 1403.755 kb on - strand, within Dshi_1352 at 1403.755 kb on - strand, within Dshi_1352 at 1403.937 kb on - strand, within Dshi_1352 at 1404.089 kb on + strand at 1404.089 kb on + strand at 1404.101 kb on + strand at 1404.180 kb on + strand at 1404.188 kb on - strand at 1404.471 kb on - strand at 1404.480 kb on - strand at 1404.595 kb on + strand at 1404.711 kb on + strand at 1404.746 kb on - strand at 1405.123 kb on + strand, within Dshi_1353 at 1405.295 kb on - strand, within Dshi_1353 at 1405.295 kb on - strand, within Dshi_1353 at 1405.295 kb on - strand, within Dshi_1353 at 1405.302 kb on + strand, within Dshi_1353 at 1405.475 kb on + strand, within Dshi_1353 at 1405.509 kb on + strand, within Dshi_1353 at 1405.614 kb on + strand, within Dshi_1353 at 1405.879 kb on + strand at 1405.952 kb on - strand at 1405.966 kb on - strand at 1406.089 kb on + strand at 1406.102 kb on + strand at 1406.235 kb on + strand, within Dshi_1354 at 1406.240 kb on + strand, within Dshi_1354 at 1406.243 kb on - strand, within Dshi_1354 at 1406.285 kb on - strand, within Dshi_1354 at 1406.415 kb on + strand, within Dshi_1354 at 1406.587 kb on + strand, within Dshi_1354 at 1406.587 kb on + strand, within Dshi_1354 at 1406.595 kb on - strand, within Dshi_1354 at 1406.595 kb on - strand, within Dshi_1354 at 1406.648 kb on + strand, within Dshi_1354 at 1406.720 kb on - strand, within Dshi_1354 at 1406.753 kb on + strand, within Dshi_1354 at 1406.826 kb on + strand, within Dshi_1354 at 1406.827 kb on - strand, within Dshi_1354 at 1406.834 kb on - strand, within Dshi_1354
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.064 mg/ml remove 1,403,755 - Dshi_1352 0.25 -0.7 1,403,755 - Dshi_1352 0.25 -0.2 1,403,937 - Dshi_1352 0.80 -0.8 1,404,089 + -0.3 1,404,089 + +0.1 1,404,101 + -0.3 1,404,180 + +0.4 1,404,188 - -0.7 1,404,471 - -0.5 1,404,480 - -0.3 1,404,595 + +0.3 1,404,711 + -0.7 1,404,746 - +0.4 1,405,123 + Dshi_1353 0.36 -1.7 1,405,295 - Dshi_1353 0.49 +0.3 1,405,295 - Dshi_1353 0.49 +0.7 1,405,295 - Dshi_1353 0.49 -0.3 1,405,302 + Dshi_1353 0.50 -0.5 1,405,475 + Dshi_1353 0.63 +1.3 1,405,509 + Dshi_1353 0.65 +1.7 1,405,614 + Dshi_1353 0.73 -0.3 1,405,879 + -0.4 1,405,952 - -0.2 1,405,966 - -0.3 1,406,089 + -0.4 1,406,102 + -1.0 1,406,235 + Dshi_1354 0.17 -0.9 1,406,240 + Dshi_1354 0.18 +0.7 1,406,243 - Dshi_1354 0.18 +0.3 1,406,285 - Dshi_1354 0.21 +0.9 1,406,415 + Dshi_1354 0.31 +0.7 1,406,587 + Dshi_1354 0.45 -0.7 1,406,587 + Dshi_1354 0.45 -0.3 1,406,595 - Dshi_1354 0.46 +0.4 1,406,595 - Dshi_1354 0.46 -0.2 1,406,648 + Dshi_1354 0.50 -0.7 1,406,720 - Dshi_1354 0.56 -0.2 1,406,753 + Dshi_1354 0.59 -1.0 1,406,826 + Dshi_1354 0.64 -0.4 1,406,827 - Dshi_1354 0.64 -1.1 1,406,834 - Dshi_1354 0.65 -0.6
Or see this region's nucleotide sequence