Experiment: m.b. Vancomycin 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1168 and Dshi_1169 are separated by 47 nucleotides Dshi_1169 and Dshi_1170 overlap by 7 nucleotides Dshi_1170 and Dshi_1171 are separated by 171 nucleotides
Dshi_1168: Dshi_1168 - aminotransferase class I and II (RefSeq), at 1,198,126 to 1,199,301
_1168
Dshi_1169: Dshi_1169 - N-acetylmuramoyl-L-alanine amidase (RefSeq), at 1,199,349 to 1,200,617
_1169
Dshi_1170: Dshi_1170 - Methyltransferase type 11 (RefSeq), at 1,200,611 to 1,201,234
_1170
Dshi_1171: Dshi_1171 - penicillin-binding protein, 1A family (RefSeq), at 1,201,406 to 1,203,928
_1171
Position (kb)
1199
1200
1201 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1198.370 kb on + strand, within Dshi_1168 at 1198.378 kb on - strand, within Dshi_1168 at 1198.535 kb on + strand, within Dshi_1168 at 1198.535 kb on + strand, within Dshi_1168 at 1198.706 kb on - strand, within Dshi_1168 at 1198.735 kb on - strand, within Dshi_1168 at 1199.007 kb on + strand, within Dshi_1168 at 1199.113 kb on - strand, within Dshi_1168 at 1199.210 kb on - strand at 1199.228 kb on + strand at 1199.432 kb on + strand at 1199.484 kb on + strand, within Dshi_1169 at 1199.496 kb on + strand, within Dshi_1169 at 1199.535 kb on - strand, within Dshi_1169 at 1199.588 kb on - strand, within Dshi_1169 at 1199.729 kb on + strand, within Dshi_1169 at 1199.767 kb on + strand, within Dshi_1169 at 1199.890 kb on - strand, within Dshi_1169 at 1199.935 kb on + strand, within Dshi_1169 at 1199.997 kb on + strand, within Dshi_1169 at 1200.054 kb on - strand, within Dshi_1169 at 1200.054 kb on - strand, within Dshi_1169 at 1200.092 kb on + strand, within Dshi_1169 at 1200.113 kb on - strand, within Dshi_1169 at 1200.336 kb on - strand, within Dshi_1169 at 1200.438 kb on + strand, within Dshi_1169 at 1200.645 kb on + strand at 1200.698 kb on - strand, within Dshi_1170 at 1200.899 kb on + strand, within Dshi_1170 at 1200.907 kb on - strand, within Dshi_1170 at 1200.927 kb on + strand, within Dshi_1170 at 1201.032 kb on - strand, within Dshi_1170 at 1201.235 kb on + strand at 1201.235 kb on + strand at 1201.296 kb on + strand at 1201.304 kb on - strand at 1201.363 kb on - strand at 1201.363 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.064 mg/ml remove 1,198,370 + Dshi_1168 0.21 +0.0 1,198,378 - Dshi_1168 0.21 -0.2 1,198,535 + Dshi_1168 0.35 +0.0 1,198,535 + Dshi_1168 0.35 +0.0 1,198,706 - Dshi_1168 0.49 -1.2 1,198,735 - Dshi_1168 0.52 +0.7 1,199,007 + Dshi_1168 0.75 +0.7 1,199,113 - Dshi_1168 0.84 -0.3 1,199,210 - -0.3 1,199,228 + +1.9 1,199,432 + -0.5 1,199,484 + Dshi_1169 0.11 -0.3 1,199,496 + Dshi_1169 0.12 -0.1 1,199,535 - Dshi_1169 0.15 -0.7 1,199,588 - Dshi_1169 0.19 -0.7 1,199,729 + Dshi_1169 0.30 -0.9 1,199,767 + Dshi_1169 0.33 -0.7 1,199,890 - Dshi_1169 0.43 -1.1 1,199,935 + Dshi_1169 0.46 -1.8 1,199,997 + Dshi_1169 0.51 -0.9 1,200,054 - Dshi_1169 0.56 -1.7 1,200,054 - Dshi_1169 0.56 +0.9 1,200,092 + Dshi_1169 0.59 -0.1 1,200,113 - Dshi_1169 0.60 -1.2 1,200,336 - Dshi_1169 0.78 -0.5 1,200,438 + Dshi_1169 0.86 -1.9 1,200,645 + -0.1 1,200,698 - Dshi_1170 0.14 -0.0 1,200,899 + Dshi_1170 0.46 -0.4 1,200,907 - Dshi_1170 0.47 -0.2 1,200,927 + Dshi_1170 0.51 -0.2 1,201,032 - Dshi_1170 0.67 -0.5 1,201,235 + -0.8 1,201,235 + +0.1 1,201,296 + -0.2 1,201,304 - -0.3 1,201,363 - -1.1 1,201,363 - -1.4
Or see this region's nucleotide sequence