Experiment: m.b. Vancomycin 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0612 and Dshi_0613 are separated by 182 nucleotides Dshi_0613 and Dshi_0614 overlap by 1 nucleotides Dshi_0614 and Dshi_0615 are separated by 21 nucleotides
Dshi_0612: Dshi_0612 - beta-lactamase domain protein (RefSeq), at 605,184 to 606,101
_0612
Dshi_0613: Dshi_0613 - band 7 protein (RefSeq), at 606,284 to 607,171
_0613
Dshi_0614: Dshi_0614 - hypothetical protein (RefSeq), at 607,171 to 607,452
_0614
Dshi_0615: Dshi_0615 - orotidine 5'-phosphate decarboxylase (RefSeq), at 607,474 to 608,172
_0615
Position (kb) 606
607
608 Strain fitness (log2 ratio) -1
0
1 at 605.288 kb on - strand, within Dshi_0612 at 605.315 kb on - strand, within Dshi_0612 at 605.341 kb on + strand, within Dshi_0612 at 605.373 kb on - strand, within Dshi_0612 at 605.395 kb on - strand, within Dshi_0612 at 605.475 kb on + strand, within Dshi_0612 at 605.475 kb on - strand, within Dshi_0612 at 605.492 kb on + strand, within Dshi_0612 at 605.571 kb on - strand, within Dshi_0612 at 605.571 kb on - strand, within Dshi_0612 at 605.593 kb on - strand, within Dshi_0612 at 605.714 kb on + strand, within Dshi_0612 at 605.714 kb on + strand, within Dshi_0612 at 605.721 kb on + strand, within Dshi_0612 at 605.749 kb on - strand, within Dshi_0612 at 605.755 kb on + strand, within Dshi_0612 at 605.818 kb on - strand, within Dshi_0612 at 605.853 kb on - strand, within Dshi_0612 at 606.014 kb on - strand at 606.016 kb on - strand at 606.080 kb on + strand at 606.111 kb on + strand at 606.130 kb on + strand at 606.217 kb on + strand at 606.220 kb on + strand at 606.259 kb on - strand at 606.283 kb on + strand at 606.296 kb on + strand at 606.296 kb on + strand at 606.315 kb on - strand at 606.404 kb on + strand, within Dshi_0613 at 606.426 kb on + strand, within Dshi_0613 at 606.464 kb on + strand, within Dshi_0613 at 606.489 kb on + strand, within Dshi_0613 at 606.598 kb on + strand, within Dshi_0613 at 606.694 kb on + strand, within Dshi_0613 at 606.915 kb on + strand, within Dshi_0613 at 606.922 kb on + strand, within Dshi_0613 at 607.012 kb on + strand, within Dshi_0613 at 607.064 kb on + strand, within Dshi_0613 at 607.072 kb on - strand, within Dshi_0613 at 607.290 kb on + strand, within Dshi_0614 at 607.322 kb on + strand, within Dshi_0614 at 607.325 kb on + strand, within Dshi_0614 at 607.424 kb on - strand at 607.633 kb on + strand, within Dshi_0615 at 607.635 kb on + strand, within Dshi_0615 at 607.739 kb on + strand, within Dshi_0615 at 607.786 kb on - strand, within Dshi_0615 at 607.786 kb on - strand, within Dshi_0615 at 607.827 kb on - strand, within Dshi_0615 at 607.884 kb on + strand, within Dshi_0615 at 607.929 kb on + strand, within Dshi_0615 at 607.929 kb on + strand, within Dshi_0615 at 607.929 kb on + strand, within Dshi_0615 at 608.039 kb on - strand, within Dshi_0615 at 608.055 kb on + strand, within Dshi_0615 at 608.106 kb on + strand at 608.106 kb on + strand at 608.114 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.064 mg/ml remove 605,288 - Dshi_0612 0.11 -0.3 605,315 - Dshi_0612 0.14 +0.1 605,341 + Dshi_0612 0.17 +0.4 605,373 - Dshi_0612 0.21 +0.7 605,395 - Dshi_0612 0.23 +0.1 605,475 + Dshi_0612 0.32 -0.3 605,475 - Dshi_0612 0.32 -0.2 605,492 + Dshi_0612 0.34 -1.1 605,571 - Dshi_0612 0.42 -0.2 605,571 - Dshi_0612 0.42 +0.6 605,593 - Dshi_0612 0.45 -0.0 605,714 + Dshi_0612 0.58 -0.7 605,714 + Dshi_0612 0.58 -0.1 605,721 + Dshi_0612 0.58 +0.6 605,749 - Dshi_0612 0.62 +0.2 605,755 + Dshi_0612 0.62 -0.1 605,818 - Dshi_0612 0.69 +0.0 605,853 - Dshi_0612 0.73 +0.3 606,014 - +0.8 606,016 - -0.3 606,080 + +1.0 606,111 + +0.4 606,130 + -0.3 606,217 + +0.0 606,220 + +0.2 606,259 - +0.7 606,283 + +0.1 606,296 + +0.7 606,296 + +0.3 606,315 - -0.7 606,404 + Dshi_0613 0.14 -0.8 606,426 + Dshi_0613 0.16 -0.2 606,464 + Dshi_0613 0.20 -0.6 606,489 + Dshi_0613 0.23 -0.6 606,598 + Dshi_0613 0.35 -1.2 606,694 + Dshi_0613 0.46 -0.1 606,915 + Dshi_0613 0.71 -0.8 606,922 + Dshi_0613 0.72 +0.8 607,012 + Dshi_0613 0.82 -1.6 607,064 + Dshi_0613 0.88 -0.7 607,072 - Dshi_0613 0.89 -0.2 607,290 + Dshi_0614 0.42 -0.2 607,322 + Dshi_0614 0.54 -1.3 607,325 + Dshi_0614 0.55 -0.2 607,424 - -0.2 607,633 + Dshi_0615 0.23 +1.4 607,635 + Dshi_0615 0.23 +0.1 607,739 + Dshi_0615 0.38 +0.5 607,786 - Dshi_0615 0.45 +0.4 607,786 - Dshi_0615 0.45 +0.6 607,827 - Dshi_0615 0.51 +0.5 607,884 + Dshi_0615 0.59 -0.3 607,929 + Dshi_0615 0.65 -0.5 607,929 + Dshi_0615 0.65 -0.3 607,929 + Dshi_0615 0.65 -0.1 608,039 - Dshi_0615 0.81 +0.9 608,055 + Dshi_0615 0.83 +0.2 608,106 + -0.8 608,106 + -0.1 608,114 - +1.4
Or see this region's nucleotide sequence