Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0535

Experiment: m.b. Vancomycin 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0534 and Dshi_0535 overlap by 1 nucleotidesDshi_0535 and Dshi_0536 are separated by 26 nucleotides Dshi_0534: Dshi_0534 - dehydrogenase E1 component (RefSeq), at 518,910 to 519,929 _0534 Dshi_0535: Dshi_0535 - Transketolase central region (RefSeq), at 519,929 to 520,912 _0535 Dshi_0536: Dshi_0536 - biotin/lipoyl attachment domain-containing protein (RefSeq), at 520,939 to 522,135 _0536 Position (kb) 519 520 521Strain fitness (log2 ratio) -2 -1 0 1at 518.934 kb on - strandat 518.935 kb on - strandat 518.982 kb on + strandat 518.987 kb on + strandat 518.999 kb on - strandat 519.018 kb on - strand, within Dshi_0534at 519.021 kb on - strand, within Dshi_0534at 519.051 kb on + strand, within Dshi_0534at 519.069 kb on - strand, within Dshi_0534at 519.135 kb on + strand, within Dshi_0534at 519.143 kb on - strand, within Dshi_0534at 519.196 kb on - strand, within Dshi_0534at 519.252 kb on - strand, within Dshi_0534at 519.280 kb on + strand, within Dshi_0534at 519.280 kb on + strand, within Dshi_0534at 519.281 kb on - strand, within Dshi_0534at 519.289 kb on + strand, within Dshi_0534at 519.308 kb on - strand, within Dshi_0534at 519.351 kb on + strand, within Dshi_0534at 519.351 kb on + strand, within Dshi_0534at 519.351 kb on + strand, within Dshi_0534at 519.351 kb on + strand, within Dshi_0534at 519.359 kb on - strand, within Dshi_0534at 519.456 kb on - strand, within Dshi_0534at 519.458 kb on + strand, within Dshi_0534at 519.466 kb on - strand, within Dshi_0534at 519.477 kb on - strand, within Dshi_0534at 519.506 kb on + strand, within Dshi_0534at 519.579 kb on + strand, within Dshi_0534at 519.579 kb on + strand, within Dshi_0534at 519.663 kb on - strand, within Dshi_0534at 519.702 kb on - strand, within Dshi_0534at 519.746 kb on + strand, within Dshi_0534at 519.759 kb on + strand, within Dshi_0534at 519.759 kb on + strand, within Dshi_0534at 519.762 kb on + strand, within Dshi_0534at 519.767 kb on - strand, within Dshi_0534at 519.770 kb on - strand, within Dshi_0534at 519.775 kb on - strand, within Dshi_0534at 519.825 kb on + strand, within Dshi_0534at 519.877 kb on - strandat 519.883 kb on - strandat 519.940 kb on + strandat 519.940 kb on + strandat 520.042 kb on + strand, within Dshi_0535at 520.133 kb on + strand, within Dshi_0535at 520.133 kb on + strand, within Dshi_0535at 520.154 kb on + strand, within Dshi_0535at 520.172 kb on + strand, within Dshi_0535at 520.288 kb on + strand, within Dshi_0535at 520.301 kb on - strand, within Dshi_0535at 520.316 kb on + strand, within Dshi_0535at 520.324 kb on - strand, within Dshi_0535at 520.353 kb on + strand, within Dshi_0535at 520.580 kb on + strand, within Dshi_0535at 520.589 kb on - strand, within Dshi_0535at 520.592 kb on + strand, within Dshi_0535at 520.592 kb on + strand, within Dshi_0535at 520.645 kb on - strand, within Dshi_0535at 520.655 kb on - strand, within Dshi_0535at 520.673 kb on + strand, within Dshi_0535at 520.684 kb on + strand, within Dshi_0535at 520.731 kb on + strand, within Dshi_0535at 520.731 kb on + strand, within Dshi_0535at 520.731 kb on - strand, within Dshi_0535at 520.742 kb on - strand, within Dshi_0535at 520.751 kb on - strand, within Dshi_0535at 520.779 kb on - strand, within Dshi_0535at 520.796 kb on + strand, within Dshi_0535at 520.822 kb on - strandat 520.833 kb on + strandat 520.925 kb on + strandat 520.950 kb on + strandat 521.014 kb on - strandat 521.042 kb on - strandat 521.068 kb on + strand, within Dshi_0536at 521.076 kb on - strand, within Dshi_0536at 521.088 kb on + strand, within Dshi_0536at 521.098 kb on + strand, within Dshi_0536at 521.161 kb on + strand, within Dshi_0536at 521.161 kb on + strand, within Dshi_0536at 521.161 kb on + strand, within Dshi_0536at 521.171 kb on + strand, within Dshi_0536at 521.171 kb on + strand, within Dshi_0536at 521.179 kb on - strand, within Dshi_0536at 521.234 kb on + strand, within Dshi_0536at 521.339 kb on + strand, within Dshi_0536at 521.415 kb on + strand, within Dshi_0536at 521.423 kb on - strand, within Dshi_0536at 521.440 kb on + strand, within Dshi_0536at 521.500 kb on - strand, within Dshi_0536at 521.534 kb on + strand, within Dshi_0536at 521.587 kb on - strand, within Dshi_0536at 521.614 kb on - strand, within Dshi_0536at 521.678 kb on + strand, within Dshi_0536at 521.797 kb on - strand, within Dshi_0536

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.064 mg/ml
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518,934 - -1.0
518,935 - +0.5
518,982 + +0.3
518,987 + -1.7
518,999 - +0.7
519,018 - Dshi_0534 0.11 +1.2
519,021 - Dshi_0534 0.11 +0.1
519,051 + Dshi_0534 0.14 +0.6
519,069 - Dshi_0534 0.16 -0.6
519,135 + Dshi_0534 0.22 +0.2
519,143 - Dshi_0534 0.23 +0.3
519,196 - Dshi_0534 0.28 -0.6
519,252 - Dshi_0534 0.34 +0.0
519,280 + Dshi_0534 0.36 +0.0
519,280 + Dshi_0534 0.36 -0.2
519,281 - Dshi_0534 0.36 -0.3
519,289 + Dshi_0534 0.37 -1.3
519,308 - Dshi_0534 0.39 -0.8
519,351 + Dshi_0534 0.43 -0.2
519,351 + Dshi_0534 0.43 -0.6
519,351 + Dshi_0534 0.43 -0.0
519,351 + Dshi_0534 0.43 +0.0
519,359 - Dshi_0534 0.44 +0.2
519,456 - Dshi_0534 0.54 -0.7
519,458 + Dshi_0534 0.54 -1.0
519,466 - Dshi_0534 0.55 +0.0
519,477 - Dshi_0534 0.56 +0.3
519,506 + Dshi_0534 0.58 -0.8
519,579 + Dshi_0534 0.66 +0.4
519,579 + Dshi_0534 0.66 -0.5
519,663 - Dshi_0534 0.74 -0.6
519,702 - Dshi_0534 0.78 -0.5
519,746 + Dshi_0534 0.82 -0.5
519,759 + Dshi_0534 0.83 +0.4
519,759 + Dshi_0534 0.83 -0.3
519,762 + Dshi_0534 0.84 +0.2
519,767 - Dshi_0534 0.84 -1.2
519,770 - Dshi_0534 0.84 -0.6
519,775 - Dshi_0534 0.85 -2.0
519,825 + Dshi_0534 0.90 -0.6
519,877 - -0.8
519,883 - -0.7
519,940 + -0.5
519,940 + +1.2
520,042 + Dshi_0535 0.11 -0.1
520,133 + Dshi_0535 0.21 +0.4
520,133 + Dshi_0535 0.21 +0.1
520,154 + Dshi_0535 0.23 +0.2
520,172 + Dshi_0535 0.25 -0.7
520,288 + Dshi_0535 0.36 -0.2
520,301 - Dshi_0535 0.38 -1.0
520,316 + Dshi_0535 0.39 -0.3
520,324 - Dshi_0535 0.40 +0.2
520,353 + Dshi_0535 0.43 -0.5
520,580 + Dshi_0535 0.66 -1.0
520,589 - Dshi_0535 0.67 -1.5
520,592 + Dshi_0535 0.67 +0.5
520,592 + Dshi_0535 0.67 +0.0
520,645 - Dshi_0535 0.73 -0.2
520,655 - Dshi_0535 0.74 -1.0
520,673 + Dshi_0535 0.76 -0.2
520,684 + Dshi_0535 0.77 +0.2
520,731 + Dshi_0535 0.82 -0.5
520,731 + Dshi_0535 0.82 -0.3
520,731 - Dshi_0535 0.82 +1.3
520,742 - Dshi_0535 0.83 +0.7
520,751 - Dshi_0535 0.84 -0.6
520,779 - Dshi_0535 0.86 +1.3
520,796 + Dshi_0535 0.88 -0.2
520,822 - -0.3
520,833 + +0.2
520,925 + -0.2
520,950 + -0.5
521,014 - +0.2
521,042 - -0.8
521,068 + Dshi_0536 0.11 -0.1
521,076 - Dshi_0536 0.11 -0.5
521,088 + Dshi_0536 0.12 -0.0
521,098 + Dshi_0536 0.13 -1.1
521,161 + Dshi_0536 0.19 -0.1
521,161 + Dshi_0536 0.19 -0.4
521,161 + Dshi_0536 0.19 -1.1
521,171 + Dshi_0536 0.19 -0.5
521,171 + Dshi_0536 0.19 -0.1
521,179 - Dshi_0536 0.20 +0.8
521,234 + Dshi_0536 0.25 +0.0
521,339 + Dshi_0536 0.33 +0.2
521,415 + Dshi_0536 0.40 -0.3
521,423 - Dshi_0536 0.40 -0.8
521,440 + Dshi_0536 0.42 +1.0
521,500 - Dshi_0536 0.47 -0.8
521,534 + Dshi_0536 0.50 -1.5
521,587 - Dshi_0536 0.54 -0.8
521,614 - Dshi_0536 0.56 -1.7
521,678 + Dshi_0536 0.62 -0.5
521,797 - Dshi_0536 0.72 +0.0

Or see this region's nucleotide sequence