Experiment: m.b. Vancomycin 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0532 and Dshi_0533 overlap by 1 nucleotides Dshi_0533 and Dshi_0534 are separated by 22 nucleotides Dshi_0534 and Dshi_0535 overlap by 1 nucleotides
Dshi_0532: Dshi_0532 - transcriptional regulator, DeoR family (RefSeq), at 517,065 to 518,039
_0532
Dshi_0533: Dshi_0533 - Xylose isomerase domain protein TIM barrel (RefSeq), at 518,039 to 518,887
_0533
Dshi_0534: Dshi_0534 - dehydrogenase E1 component (RefSeq), at 518,910 to 519,929
_0534
Dshi_0535: Dshi_0535 - Transketolase central region (RefSeq), at 519,929 to 520,912
_0535
Position (kb)
518
519
520 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 517.930 kb on + strand, within Dshi_0532 at 517.942 kb on + strand at 517.942 kb on + strand at 517.950 kb on + strand at 517.950 kb on - strand at 517.995 kb on - strand at 518.007 kb on - strand at 518.022 kb on - strand at 518.031 kb on + strand at 518.079 kb on + strand at 518.087 kb on - strand at 518.091 kb on - strand at 518.091 kb on - strand at 518.091 kb on - strand at 518.091 kb on - strand at 518.116 kb on + strand at 518.117 kb on + strand at 518.124 kb on - strand, within Dshi_0533 at 518.124 kb on - strand, within Dshi_0533 at 518.161 kb on - strand, within Dshi_0533 at 518.175 kb on - strand, within Dshi_0533 at 518.275 kb on - strand, within Dshi_0533 at 518.292 kb on + strand, within Dshi_0533 at 518.322 kb on + strand, within Dshi_0533 at 518.363 kb on - strand, within Dshi_0533 at 518.414 kb on + strand, within Dshi_0533 at 518.437 kb on + strand, within Dshi_0533 at 518.497 kb on + strand, within Dshi_0533 at 518.525 kb on - strand, within Dshi_0533 at 518.541 kb on + strand, within Dshi_0533 at 518.546 kb on + strand, within Dshi_0533 at 518.571 kb on - strand, within Dshi_0533 at 518.599 kb on - strand, within Dshi_0533 at 518.635 kb on + strand, within Dshi_0533 at 518.665 kb on + strand, within Dshi_0533 at 518.672 kb on + strand, within Dshi_0533 at 518.685 kb on - strand, within Dshi_0533 at 518.755 kb on - strand, within Dshi_0533 at 518.811 kb on + strand at 518.849 kb on + strand at 518.881 kb on + strand at 518.892 kb on + strand at 518.910 kb on - strand at 518.934 kb on - strand at 518.935 kb on - strand at 518.982 kb on + strand at 518.987 kb on + strand at 518.999 kb on - strand at 519.018 kb on - strand, within Dshi_0534 at 519.021 kb on - strand, within Dshi_0534 at 519.051 kb on + strand, within Dshi_0534 at 519.069 kb on - strand, within Dshi_0534 at 519.135 kb on + strand, within Dshi_0534 at 519.143 kb on - strand, within Dshi_0534 at 519.196 kb on - strand, within Dshi_0534 at 519.252 kb on - strand, within Dshi_0534 at 519.280 kb on + strand, within Dshi_0534 at 519.280 kb on + strand, within Dshi_0534 at 519.281 kb on - strand, within Dshi_0534 at 519.289 kb on + strand, within Dshi_0534 at 519.308 kb on - strand, within Dshi_0534 at 519.351 kb on + strand, within Dshi_0534 at 519.351 kb on + strand, within Dshi_0534 at 519.351 kb on + strand, within Dshi_0534 at 519.351 kb on + strand, within Dshi_0534 at 519.359 kb on - strand, within Dshi_0534 at 519.456 kb on - strand, within Dshi_0534 at 519.458 kb on + strand, within Dshi_0534 at 519.466 kb on - strand, within Dshi_0534 at 519.477 kb on - strand, within Dshi_0534 at 519.506 kb on + strand, within Dshi_0534 at 519.579 kb on + strand, within Dshi_0534 at 519.579 kb on + strand, within Dshi_0534 at 519.663 kb on - strand, within Dshi_0534 at 519.702 kb on - strand, within Dshi_0534 at 519.746 kb on + strand, within Dshi_0534 at 519.759 kb on + strand, within Dshi_0534 at 519.759 kb on + strand, within Dshi_0534 at 519.762 kb on + strand, within Dshi_0534 at 519.767 kb on - strand, within Dshi_0534 at 519.770 kb on - strand, within Dshi_0534 at 519.775 kb on - strand, within Dshi_0534 at 519.825 kb on + strand, within Dshi_0534 at 519.877 kb on - strand at 519.883 kb on - strand at 519.940 kb on + strand at 519.940 kb on + strand at 520.042 kb on + strand, within Dshi_0535 at 520.133 kb on + strand, within Dshi_0535 at 520.133 kb on + strand, within Dshi_0535 at 520.154 kb on + strand, within Dshi_0535 at 520.172 kb on + strand, within Dshi_0535 at 520.288 kb on + strand, within Dshi_0535 at 520.301 kb on - strand, within Dshi_0535 at 520.316 kb on + strand, within Dshi_0535 at 520.324 kb on - strand, within Dshi_0535 at 520.353 kb on + strand, within Dshi_0535 at 520.580 kb on + strand, within Dshi_0535 at 520.589 kb on - strand, within Dshi_0535 at 520.592 kb on + strand, within Dshi_0535 at 520.592 kb on + strand, within Dshi_0535 at 520.645 kb on - strand, within Dshi_0535 at 520.655 kb on - strand, within Dshi_0535 at 520.673 kb on + strand, within Dshi_0535 at 520.684 kb on + strand, within Dshi_0535 at 520.731 kb on + strand, within Dshi_0535 at 520.731 kb on + strand, within Dshi_0535 at 520.731 kb on - strand, within Dshi_0535 at 520.742 kb on - strand, within Dshi_0535 at 520.751 kb on - strand, within Dshi_0535 at 520.779 kb on - strand, within Dshi_0535 at 520.796 kb on + strand, within Dshi_0535 at 520.822 kb on - strand at 520.833 kb on + strand at 520.925 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.064 mg/ml remove 517,930 + Dshi_0532 0.89 +0.9 517,942 + -1.3 517,942 + -0.2 517,950 + +0.3 517,950 - -1.1 517,995 - -0.8 518,007 - +1.9 518,022 - -0.2 518,031 + +0.0 518,079 + +0.2 518,087 - -1.0 518,091 - -0.3 518,091 - +0.9 518,091 - -0.0 518,091 - +1.0 518,116 + -0.2 518,117 + +0.6 518,124 - Dshi_0533 0.10 -0.5 518,124 - Dshi_0533 0.10 -1.2 518,161 - Dshi_0533 0.14 -0.8 518,175 - Dshi_0533 0.16 -0.1 518,275 - Dshi_0533 0.28 -0.5 518,292 + Dshi_0533 0.30 -0.2 518,322 + Dshi_0533 0.33 +0.7 518,363 - Dshi_0533 0.38 -0.5 518,414 + Dshi_0533 0.44 +0.7 518,437 + Dshi_0533 0.47 +1.4 518,497 + Dshi_0533 0.54 +0.2 518,525 - Dshi_0533 0.57 +0.4 518,541 + Dshi_0533 0.59 +0.0 518,546 + Dshi_0533 0.60 -0.2 518,571 - Dshi_0533 0.63 -0.5 518,599 - Dshi_0533 0.66 +0.2 518,635 + Dshi_0533 0.70 +0.6 518,665 + Dshi_0533 0.74 -1.3 518,672 + Dshi_0533 0.75 +0.1 518,685 - Dshi_0533 0.76 -0.3 518,755 - Dshi_0533 0.84 -0.1 518,811 + -0.5 518,849 + -0.3 518,881 + -0.6 518,892 + -0.3 518,910 - +0.0 518,934 - -1.0 518,935 - +0.5 518,982 + +0.3 518,987 + -1.7 518,999 - +0.7 519,018 - Dshi_0534 0.11 +1.2 519,021 - Dshi_0534 0.11 +0.1 519,051 + Dshi_0534 0.14 +0.6 519,069 - Dshi_0534 0.16 -0.6 519,135 + Dshi_0534 0.22 +0.2 519,143 - Dshi_0534 0.23 +0.3 519,196 - Dshi_0534 0.28 -0.6 519,252 - Dshi_0534 0.34 +0.0 519,280 + Dshi_0534 0.36 +0.0 519,280 + Dshi_0534 0.36 -0.2 519,281 - Dshi_0534 0.36 -0.3 519,289 + Dshi_0534 0.37 -1.3 519,308 - Dshi_0534 0.39 -0.8 519,351 + Dshi_0534 0.43 -0.2 519,351 + Dshi_0534 0.43 -0.6 519,351 + Dshi_0534 0.43 -0.0 519,351 + Dshi_0534 0.43 +0.0 519,359 - Dshi_0534 0.44 +0.2 519,456 - Dshi_0534 0.54 -0.7 519,458 + Dshi_0534 0.54 -1.0 519,466 - Dshi_0534 0.55 +0.0 519,477 - Dshi_0534 0.56 +0.3 519,506 + Dshi_0534 0.58 -0.8 519,579 + Dshi_0534 0.66 +0.4 519,579 + Dshi_0534 0.66 -0.5 519,663 - Dshi_0534 0.74 -0.6 519,702 - Dshi_0534 0.78 -0.5 519,746 + Dshi_0534 0.82 -0.5 519,759 + Dshi_0534 0.83 +0.4 519,759 + Dshi_0534 0.83 -0.3 519,762 + Dshi_0534 0.84 +0.2 519,767 - Dshi_0534 0.84 -1.2 519,770 - Dshi_0534 0.84 -0.6 519,775 - Dshi_0534 0.85 -2.0 519,825 + Dshi_0534 0.90 -0.6 519,877 - -0.8 519,883 - -0.7 519,940 + -0.5 519,940 + +1.2 520,042 + Dshi_0535 0.11 -0.1 520,133 + Dshi_0535 0.21 +0.4 520,133 + Dshi_0535 0.21 +0.1 520,154 + Dshi_0535 0.23 +0.2 520,172 + Dshi_0535 0.25 -0.7 520,288 + Dshi_0535 0.36 -0.2 520,301 - Dshi_0535 0.38 -1.0 520,316 + Dshi_0535 0.39 -0.3 520,324 - Dshi_0535 0.40 +0.2 520,353 + Dshi_0535 0.43 -0.5 520,580 + Dshi_0535 0.66 -1.0 520,589 - Dshi_0535 0.67 -1.5 520,592 + Dshi_0535 0.67 +0.5 520,592 + Dshi_0535 0.67 +0.0 520,645 - Dshi_0535 0.73 -0.2 520,655 - Dshi_0535 0.74 -1.0 520,673 + Dshi_0535 0.76 -0.2 520,684 + Dshi_0535 0.77 +0.2 520,731 + Dshi_0535 0.82 -0.5 520,731 + Dshi_0535 0.82 -0.3 520,731 - Dshi_0535 0.82 +1.3 520,742 - Dshi_0535 0.83 +0.7 520,751 - Dshi_0535 0.84 -0.6 520,779 - Dshi_0535 0.86 +1.3 520,796 + Dshi_0535 0.88 -0.2 520,822 - -0.3 520,833 + +0.2 520,925 + -0.2
Or see this region's nucleotide sequence