Experiment: m.b. Vancomycin 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0481 and Dshi_0482 are separated by 467 nucleotides Dshi_0482 and Dshi_0483 are separated by 158 nucleotides
Dshi_0481: Dshi_0481 - hypothetical protein (RefSeq), at 466,019 to 466,831
_0481
Dshi_0482: Dshi_0482 - hypothetical protein (RefSeq), at 467,299 to 467,784
_0482
Dshi_0483: Dshi_0483 - hypothetical protein (RefSeq), at 467,943 to 469,130
_0483
Position (kb) 467
468 Strain fitness (log2 ratio) -2
-1
0
1
2 at 466.331 kb on + strand, within Dshi_0481 at 466.334 kb on - strand, within Dshi_0481 at 466.351 kb on - strand, within Dshi_0481 at 466.433 kb on - strand, within Dshi_0481 at 466.486 kb on - strand, within Dshi_0481 at 466.583 kb on - strand, within Dshi_0481 at 466.583 kb on - strand, within Dshi_0481 at 466.583 kb on - strand, within Dshi_0481 at 466.637 kb on + strand, within Dshi_0481 at 466.637 kb on + strand, within Dshi_0481 at 466.674 kb on - strand, within Dshi_0481 at 466.702 kb on + strand, within Dshi_0481 at 466.702 kb on + strand, within Dshi_0481 at 466.703 kb on - strand, within Dshi_0481 at 466.710 kb on - strand, within Dshi_0481 at 466.710 kb on - strand, within Dshi_0481 at 466.731 kb on + strand, within Dshi_0481 at 466.743 kb on + strand, within Dshi_0481 at 466.743 kb on + strand, within Dshi_0481 at 466.743 kb on + strand, within Dshi_0481 at 466.743 kb on + strand, within Dshi_0481 at 466.743 kb on + strand, within Dshi_0481 at 466.743 kb on + strand, within Dshi_0481 at 466.743 kb on + strand, within Dshi_0481 at 466.743 kb on + strand, within Dshi_0481 at 466.743 kb on + strand, within Dshi_0481 at 466.743 kb on + strand, within Dshi_0481 at 466.751 kb on - strand at 466.751 kb on - strand at 466.751 kb on - strand at 466.751 kb on - strand at 466.763 kb on - strand at 466.763 kb on - strand at 466.786 kb on + strand at 466.799 kb on - strand at 466.799 kb on - strand at 466.819 kb on - strand at 466.854 kb on + strand at 466.856 kb on + strand at 466.864 kb on - strand at 466.891 kb on + strand at 466.894 kb on - strand at 466.963 kb on + strand at 466.963 kb on + strand at 466.963 kb on + strand at 466.963 kb on + strand at 466.971 kb on - strand at 466.971 kb on - strand at 466.971 kb on - strand at 466.986 kb on + strand at 467.017 kb on + strand at 467.025 kb on - strand at 467.025 kb on - strand at 467.045 kb on + strand at 467.059 kb on + strand at 467.159 kb on + strand at 467.169 kb on + strand at 467.169 kb on + strand at 467.169 kb on + strand at 467.169 kb on + strand at 467.169 kb on + strand at 467.177 kb on - strand at 467.177 kb on - strand at 467.211 kb on - strand at 467.217 kb on - strand at 467.252 kb on + strand at 467.252 kb on + strand at 467.253 kb on + strand at 467.253 kb on + strand at 467.271 kb on + strand at 467.271 kb on + strand at 467.286 kb on + strand at 467.294 kb on - strand at 467.334 kb on - strand at 467.346 kb on + strand at 467.351 kb on + strand, within Dshi_0482 at 467.354 kb on - strand, within Dshi_0482 at 467.356 kb on + strand, within Dshi_0482 at 467.356 kb on + strand, within Dshi_0482 at 467.356 kb on + strand, within Dshi_0482 at 467.361 kb on + strand, within Dshi_0482 at 467.364 kb on - strand, within Dshi_0482 at 467.393 kb on + strand, within Dshi_0482 at 467.393 kb on + strand, within Dshi_0482 at 467.393 kb on + strand, within Dshi_0482 at 467.393 kb on + strand, within Dshi_0482 at 467.393 kb on + strand, within Dshi_0482 at 467.401 kb on - strand, within Dshi_0482 at 467.401 kb on - strand, within Dshi_0482 at 467.401 kb on - strand, within Dshi_0482 at 467.401 kb on - strand, within Dshi_0482 at 467.401 kb on - strand, within Dshi_0482 at 467.401 kb on - strand, within Dshi_0482 at 467.403 kb on + strand, within Dshi_0482 at 467.411 kb on - strand, within Dshi_0482 at 467.411 kb on - strand, within Dshi_0482 at 467.427 kb on + strand, within Dshi_0482 at 467.427 kb on + strand, within Dshi_0482 at 467.427 kb on + strand, within Dshi_0482 at 467.435 kb on - strand, within Dshi_0482 at 467.435 kb on - strand, within Dshi_0482 at 467.435 kb on - strand, within Dshi_0482 at 467.452 kb on + strand, within Dshi_0482 at 467.453 kb on - strand, within Dshi_0482 at 467.482 kb on + strand, within Dshi_0482 at 467.482 kb on + strand, within Dshi_0482 at 467.482 kb on + strand, within Dshi_0482 at 467.482 kb on + strand, within Dshi_0482 at 467.490 kb on - strand, within Dshi_0482 at 467.495 kb on + strand, within Dshi_0482 at 467.495 kb on + strand, within Dshi_0482 at 467.500 kb on + strand, within Dshi_0482 at 467.587 kb on - strand, within Dshi_0482 at 467.589 kb on + strand, within Dshi_0482 at 467.589 kb on + strand, within Dshi_0482 at 467.597 kb on + strand, within Dshi_0482 at 467.597 kb on - strand, within Dshi_0482 at 467.597 kb on - strand, within Dshi_0482 at 467.597 kb on - strand, within Dshi_0482 at 467.603 kb on + strand, within Dshi_0482 at 467.634 kb on - strand, within Dshi_0482 at 467.636 kb on + strand, within Dshi_0482 at 467.659 kb on - strand, within Dshi_0482 at 467.661 kb on + strand, within Dshi_0482 at 467.670 kb on - strand, within Dshi_0482 at 467.704 kb on + strand, within Dshi_0482 at 467.704 kb on + strand, within Dshi_0482 at 467.709 kb on + strand, within Dshi_0482 at 467.711 kb on - strand, within Dshi_0482 at 467.711 kb on - strand, within Dshi_0482 at 467.717 kb on - strand, within Dshi_0482 at 467.723 kb on + strand, within Dshi_0482 at 467.723 kb on + strand, within Dshi_0482 at 467.750 kb on + strand at 467.758 kb on - strand at 467.758 kb on - strand at 467.820 kb on - strand at 467.835 kb on - strand at 467.835 kb on - strand at 467.835 kb on - strand at 467.835 kb on - strand at 467.850 kb on + strand at 467.858 kb on - strand at 467.864 kb on + strand at 467.864 kb on + strand at 467.872 kb on - strand at 467.875 kb on + strand at 467.891 kb on - strand at 467.931 kb on + strand at 467.939 kb on - strand at 467.939 kb on - strand at 467.984 kb on + strand at 467.984 kb on + strand at 468.030 kb on + strand at 468.064 kb on - strand, within Dshi_0483 at 468.077 kb on + strand, within Dshi_0483 at 468.090 kb on + strand, within Dshi_0483 at 468.098 kb on - strand, within Dshi_0483 at 468.098 kb on - strand, within Dshi_0483 at 468.165 kb on - strand, within Dshi_0483 at 468.201 kb on + strand, within Dshi_0483 at 468.202 kb on - strand, within Dshi_0483 at 468.232 kb on - strand, within Dshi_0483 at 468.307 kb on - strand, within Dshi_0483 at 468.327 kb on + strand, within Dshi_0483 at 468.351 kb on + strand, within Dshi_0483 at 468.371 kb on + strand, within Dshi_0483 at 468.381 kb on + strand, within Dshi_0483 at 468.381 kb on + strand, within Dshi_0483 at 468.389 kb on - strand, within Dshi_0483 at 468.389 kb on - strand, within Dshi_0483 at 468.494 kb on + strand, within Dshi_0483 at 468.525 kb on - strand, within Dshi_0483 at 468.549 kb on + strand, within Dshi_0483 at 468.598 kb on - strand, within Dshi_0483 at 468.598 kb on - strand, within Dshi_0483 at 468.619 kb on - strand, within Dshi_0483 at 468.663 kb on - strand, within Dshi_0483 at 468.668 kb on - strand, within Dshi_0483 at 468.676 kb on - strand, within Dshi_0483 at 468.698 kb on + strand, within Dshi_0483 at 468.699 kb on - strand, within Dshi_0483 at 468.699 kb on - strand, within Dshi_0483 at 468.706 kb on - strand, within Dshi_0483 at 468.741 kb on - strand, within Dshi_0483 at 468.755 kb on - strand, within Dshi_0483 at 468.757 kb on - strand, within Dshi_0483 at 468.761 kb on + strand, within Dshi_0483 at 468.762 kb on + strand, within Dshi_0483 at 468.768 kb on + strand, within Dshi_0483 at 468.770 kb on - strand, within Dshi_0483 at 468.770 kb on - strand, within Dshi_0483 at 468.778 kb on - strand, within Dshi_0483
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.064 mg/ml remove 466,331 + Dshi_0481 0.38 -0.7 466,334 - Dshi_0481 0.39 -0.4 466,351 - Dshi_0481 0.41 -0.3 466,433 - Dshi_0481 0.51 -1.5 466,486 - Dshi_0481 0.57 +1.1 466,583 - Dshi_0481 0.69 -1.5 466,583 - Dshi_0481 0.69 -0.6 466,583 - Dshi_0481 0.69 +0.4 466,637 + Dshi_0481 0.76 -0.1 466,637 + Dshi_0481 0.76 +1.1 466,674 - Dshi_0481 0.81 -1.2 466,702 + Dshi_0481 0.84 +0.6 466,702 + Dshi_0481 0.84 -2.6 466,703 - Dshi_0481 0.84 +0.1 466,710 - Dshi_0481 0.85 +0.0 466,710 - Dshi_0481 0.85 +0.4 466,731 + Dshi_0481 0.88 -0.6 466,743 + Dshi_0481 0.89 -0.6 466,743 + Dshi_0481 0.89 +0.5 466,743 + Dshi_0481 0.89 -0.5 466,743 + Dshi_0481 0.89 -0.4 466,743 + Dshi_0481 0.89 +0.1 466,743 + Dshi_0481 0.89 -2.1 466,743 + Dshi_0481 0.89 +0.6 466,743 + Dshi_0481 0.89 -0.2 466,743 + Dshi_0481 0.89 +0.4 466,743 + Dshi_0481 0.89 +0.1 466,751 - -0.3 466,751 - +2.1 466,751 - +0.1 466,751 - +0.2 466,763 - +0.7 466,763 - -1.5 466,786 + -0.0 466,799 - +0.7 466,799 - -0.4 466,819 - +0.5 466,854 + +0.3 466,856 + -0.5 466,864 - -0.2 466,891 + -0.4 466,894 - +0.2 466,963 + -0.1 466,963 + -0.9 466,963 + +0.6 466,963 + -0.4 466,971 - -0.2 466,971 - -0.2 466,971 - -0.9 466,986 + -0.1 467,017 + -0.4 467,025 - +0.6 467,025 - +0.0 467,045 + -0.8 467,059 + -0.7 467,159 + -0.5 467,169 + +0.1 467,169 + +1.5 467,169 + -0.7 467,169 + -0.4 467,169 + -0.1 467,177 - -0.6 467,177 - +0.7 467,211 - -0.5 467,217 - -0.4 467,252 + -0.4 467,252 + +0.7 467,253 + +0.6 467,253 + -1.4 467,271 + +2.6 467,271 + -1.0 467,286 + -1.0 467,294 - +0.1 467,334 - +0.2 467,346 + -0.0 467,351 + Dshi_0482 0.11 -0.8 467,354 - Dshi_0482 0.11 -0.4 467,356 + Dshi_0482 0.12 -0.2 467,356 + Dshi_0482 0.12 -1.4 467,356 + Dshi_0482 0.12 +0.1 467,361 + Dshi_0482 0.13 -0.9 467,364 - Dshi_0482 0.13 -0.2 467,393 + Dshi_0482 0.19 -1.3 467,393 + Dshi_0482 0.19 +0.5 467,393 + Dshi_0482 0.19 +1.5 467,393 + Dshi_0482 0.19 +1.2 467,393 + Dshi_0482 0.19 +0.0 467,401 - Dshi_0482 0.21 -0.2 467,401 - Dshi_0482 0.21 -0.4 467,401 - Dshi_0482 0.21 -0.3 467,401 - Dshi_0482 0.21 +0.3 467,401 - Dshi_0482 0.21 -0.8 467,401 - Dshi_0482 0.21 -0.0 467,403 + Dshi_0482 0.21 -0.1 467,411 - Dshi_0482 0.23 +1.6 467,411 - Dshi_0482 0.23 -1.2 467,427 + Dshi_0482 0.26 +0.2 467,427 + Dshi_0482 0.26 -0.3 467,427 + Dshi_0482 0.26 -1.1 467,435 - Dshi_0482 0.28 +0.0 467,435 - Dshi_0482 0.28 -0.2 467,435 - Dshi_0482 0.28 -0.7 467,452 + Dshi_0482 0.31 -0.6 467,453 - Dshi_0482 0.32 -0.2 467,482 + Dshi_0482 0.38 -0.8 467,482 + Dshi_0482 0.38 -2.1 467,482 + Dshi_0482 0.38 +0.5 467,482 + Dshi_0482 0.38 +1.0 467,490 - Dshi_0482 0.39 -0.1 467,495 + Dshi_0482 0.40 -0.3 467,495 + Dshi_0482 0.40 +0.0 467,500 + Dshi_0482 0.41 +0.1 467,587 - Dshi_0482 0.59 -0.1 467,589 + Dshi_0482 0.60 -0.2 467,589 + Dshi_0482 0.60 +0.0 467,597 + Dshi_0482 0.61 -1.1 467,597 - Dshi_0482 0.61 +1.0 467,597 - Dshi_0482 0.61 -0.6 467,597 - Dshi_0482 0.61 -1.2 467,603 + Dshi_0482 0.63 -0.8 467,634 - Dshi_0482 0.69 +0.1 467,636 + Dshi_0482 0.69 +0.6 467,659 - Dshi_0482 0.74 -0.2 467,661 + Dshi_0482 0.74 -0.2 467,670 - Dshi_0482 0.76 +0.1 467,704 + Dshi_0482 0.83 +0.0 467,704 + Dshi_0482 0.83 -0.3 467,709 + Dshi_0482 0.84 +0.3 467,711 - Dshi_0482 0.85 -0.3 467,711 - Dshi_0482 0.85 +0.0 467,717 - Dshi_0482 0.86 -0.2 467,723 + Dshi_0482 0.87 +0.4 467,723 + Dshi_0482 0.87 +0.8 467,750 + -0.5 467,758 - +0.4 467,758 - -0.1 467,820 - +0.3 467,835 - +0.2 467,835 - -1.2 467,835 - +1.2 467,835 - -1.3 467,850 + +0.1 467,858 - +1.2 467,864 + -0.0 467,864 + -1.1 467,872 - -0.4 467,875 + -0.1 467,891 - +0.5 467,931 + -0.7 467,939 - +0.6 467,939 - -0.1 467,984 + -0.9 467,984 + +1.0 468,030 + -0.2 468,064 - Dshi_0483 0.10 -0.2 468,077 + Dshi_0483 0.11 -1.9 468,090 + Dshi_0483 0.12 -0.8 468,098 - Dshi_0483 0.13 +0.7 468,098 - Dshi_0483 0.13 +0.0 468,165 - Dshi_0483 0.19 +0.7 468,201 + Dshi_0483 0.22 -0.4 468,202 - Dshi_0483 0.22 -0.3 468,232 - Dshi_0483 0.24 +0.2 468,307 - Dshi_0483 0.31 -0.3 468,327 + Dshi_0483 0.32 -1.1 468,351 + Dshi_0483 0.34 -0.5 468,371 + Dshi_0483 0.36 -0.5 468,381 + Dshi_0483 0.37 -0.4 468,381 + Dshi_0483 0.37 -0.2 468,389 - Dshi_0483 0.38 -0.3 468,389 - Dshi_0483 0.38 -0.1 468,494 + Dshi_0483 0.46 -0.2 468,525 - Dshi_0483 0.49 -0.2 468,549 + Dshi_0483 0.51 -0.3 468,598 - Dshi_0483 0.55 +0.9 468,598 - Dshi_0483 0.55 -0.0 468,619 - Dshi_0483 0.57 +1.8 468,663 - Dshi_0483 0.61 -0.3 468,668 - Dshi_0483 0.61 -0.1 468,676 - Dshi_0483 0.62 +0.0 468,698 + Dshi_0483 0.64 -0.2 468,699 - Dshi_0483 0.64 -0.1 468,699 - Dshi_0483 0.64 -0.0 468,706 - Dshi_0483 0.64 -0.4 468,741 - Dshi_0483 0.67 -0.9 468,755 - Dshi_0483 0.68 -0.2 468,757 - Dshi_0483 0.69 -0.1 468,761 + Dshi_0483 0.69 +0.1 468,762 + Dshi_0483 0.69 -0.4 468,768 + Dshi_0483 0.69 +0.3 468,770 - Dshi_0483 0.70 +0.0 468,770 - Dshi_0483 0.70 -0.5 468,778 - Dshi_0483 0.70 +0.5
Or see this region's nucleotide sequence