Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0433

Experiment: m.b. Vancomycin 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0432 and Dshi_0433 are separated by 13 nucleotidesDshi_0433 and Dshi_0434 are separated by 3 nucleotides Dshi_0432: Dshi_0432 - Arginine deiminase (RefSeq), at 423,677 to 424,906 _0432 Dshi_0433: Dshi_0433 - ornithine carbamoyltransferase (RefSeq), at 424,920 to 425,921 _0433 Dshi_0434: Dshi_0434 - carbamate kinase (RefSeq), at 425,925 to 426,863 _0434 Position (kb) 424 425 426Strain fitness (log2 ratio) -3 -2 -1 0 1at 423.923 kb on - strand, within Dshi_0432at 424.017 kb on + strand, within Dshi_0432at 424.025 kb on - strand, within Dshi_0432at 424.097 kb on + strand, within Dshi_0432at 424.100 kb on - strand, within Dshi_0432at 424.113 kb on + strand, within Dshi_0432at 424.121 kb on - strand, within Dshi_0432at 424.179 kb on - strand, within Dshi_0432at 424.185 kb on + strand, within Dshi_0432at 424.290 kb on - strand, within Dshi_0432at 424.305 kb on + strand, within Dshi_0432at 424.328 kb on - strand, within Dshi_0432at 424.332 kb on - strand, within Dshi_0432at 424.356 kb on + strand, within Dshi_0432at 424.512 kb on - strand, within Dshi_0432at 424.533 kb on + strand, within Dshi_0432at 424.541 kb on - strand, within Dshi_0432at 424.610 kb on + strand, within Dshi_0432at 424.627 kb on + strand, within Dshi_0432at 424.633 kb on + strand, within Dshi_0432at 424.646 kb on + strand, within Dshi_0432at 424.675 kb on + strand, within Dshi_0432at 424.686 kb on + strand, within Dshi_0432at 424.686 kb on + strand, within Dshi_0432at 424.899 kb on + strandat 424.899 kb on + strandat 424.901 kb on + strandat 424.909 kb on - strandat 424.909 kb on - strandat 424.909 kb on - strandat 424.909 kb on - strandat 424.924 kb on + strandat 424.948 kb on + strandat 425.043 kb on - strand, within Dshi_0433at 425.043 kb on - strand, within Dshi_0433at 425.122 kb on + strand, within Dshi_0433at 425.122 kb on + strand, within Dshi_0433at 425.122 kb on + strand, within Dshi_0433at 425.122 kb on + strand, within Dshi_0433at 425.130 kb on - strand, within Dshi_0433at 425.130 kb on - strand, within Dshi_0433at 425.139 kb on + strand, within Dshi_0433at 425.157 kb on - strand, within Dshi_0433at 425.188 kb on - strand, within Dshi_0433at 425.216 kb on - strand, within Dshi_0433at 425.275 kb on - strand, within Dshi_0433at 425.307 kb on - strand, within Dshi_0433at 425.317 kb on + strand, within Dshi_0433at 425.325 kb on - strand, within Dshi_0433at 425.336 kb on - strand, within Dshi_0433at 425.391 kb on + strand, within Dshi_0433at 425.415 kb on + strand, within Dshi_0433at 425.422 kb on + strand, within Dshi_0433at 425.428 kb on - strand, within Dshi_0433at 425.435 kb on - strand, within Dshi_0433at 425.450 kb on + strand, within Dshi_0433at 425.459 kb on + strand, within Dshi_0433at 425.467 kb on + strand, within Dshi_0433at 425.492 kb on + strandat 425.497 kb on + strand, within Dshi_0433at 425.499 kb on - strand, within Dshi_0433at 425.505 kb on - strand, within Dshi_0433at 425.526 kb on - strand, within Dshi_0433at 425.536 kb on - strand, within Dshi_0433at 425.548 kb on - strand, within Dshi_0433at 425.548 kb on - strand, within Dshi_0433at 425.548 kb on - strand, within Dshi_0433at 425.564 kb on + strand, within Dshi_0433at 425.574 kb on + strand, within Dshi_0433at 425.630 kb on + strand, within Dshi_0433at 425.682 kb on - strand, within Dshi_0433at 425.684 kb on + strand, within Dshi_0433at 425.684 kb on + strand, within Dshi_0433at 425.784 kb on + strand, within Dshi_0433at 425.803 kb on - strand, within Dshi_0433at 425.817 kb on - strand, within Dshi_0433at 425.898 kb on - strandat 425.923 kb on - strandat 425.928 kb on - strandat 425.928 kb on - strandat 425.968 kb on - strandat 426.029 kb on + strand, within Dshi_0434at 426.037 kb on - strand, within Dshi_0434at 426.037 kb on - strand, within Dshi_0434at 426.063 kb on - strand, within Dshi_0434at 426.086 kb on + strand, within Dshi_0434at 426.114 kb on + strand, within Dshi_0434at 426.213 kb on + strand, within Dshi_0434at 426.213 kb on + strand, within Dshi_0434at 426.221 kb on - strand, within Dshi_0434at 426.242 kb on + strand, within Dshi_0434at 426.350 kb on - strand, within Dshi_0434at 426.363 kb on + strand, within Dshi_0434at 426.456 kb on - strand, within Dshi_0434at 426.456 kb on - strand, within Dshi_0434at 426.856 kb on - strandat 426.882 kb on + strandat 426.882 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.064 mg/ml
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423,923 - Dshi_0432 0.20 +0.3
424,017 + Dshi_0432 0.28 -0.1
424,025 - Dshi_0432 0.28 -0.6
424,097 + Dshi_0432 0.34 -1.0
424,100 - Dshi_0432 0.34 +0.3
424,113 + Dshi_0432 0.35 +1.1
424,121 - Dshi_0432 0.36 -0.3
424,179 - Dshi_0432 0.41 -0.2
424,185 + Dshi_0432 0.41 -0.2
424,290 - Dshi_0432 0.50 -0.9
424,305 + Dshi_0432 0.51 +0.4
424,328 - Dshi_0432 0.53 -1.5
424,332 - Dshi_0432 0.53 -0.5
424,356 + Dshi_0432 0.55 -1.9
424,512 - Dshi_0432 0.68 -0.2
424,533 + Dshi_0432 0.70 -0.9
424,541 - Dshi_0432 0.70 -1.5
424,610 + Dshi_0432 0.76 +0.1
424,627 + Dshi_0432 0.77 +0.1
424,633 + Dshi_0432 0.78 -0.6
424,646 + Dshi_0432 0.79 +0.4
424,675 + Dshi_0432 0.81 -0.2
424,686 + Dshi_0432 0.82 -0.5
424,686 + Dshi_0432 0.82 -0.1
424,899 + -0.4
424,899 + -0.1
424,901 + -0.9
424,909 - -0.6
424,909 - -0.5
424,909 - -1.2
424,909 - +1.3
424,924 + +0.5
424,948 + -2.9
425,043 - Dshi_0433 0.12 +1.5
425,043 - Dshi_0433 0.12 -0.3
425,122 + Dshi_0433 0.20 -0.0
425,122 + Dshi_0433 0.20 +0.9
425,122 + Dshi_0433 0.20 +0.0
425,122 + Dshi_0433 0.20 -0.3
425,130 - Dshi_0433 0.21 +0.1
425,130 - Dshi_0433 0.21 +0.2
425,139 + Dshi_0433 0.22 -0.4
425,157 - Dshi_0433 0.24 +0.6
425,188 - Dshi_0433 0.27 +0.3
425,216 - Dshi_0433 0.30 +0.2
425,275 - Dshi_0433 0.35 +0.1
425,307 - Dshi_0433 0.39 +0.1
425,317 + Dshi_0433 0.40 +0.5
425,325 - Dshi_0433 0.40 -0.1
425,336 - Dshi_0433 0.42 +0.3
425,391 + Dshi_0433 0.47 -0.5
425,415 + Dshi_0433 0.49 -0.1
425,422 + Dshi_0433 0.50 +0.4
425,428 - Dshi_0433 0.51 -0.1
425,435 - Dshi_0433 0.51 +0.1
425,450 + Dshi_0433 0.53 -0.2
425,459 + Dshi_0433 0.54 -0.2
425,467 + Dshi_0433 0.55 -0.1
425,492 + -0.2
425,497 + Dshi_0433 0.58 +0.4
425,499 - Dshi_0433 0.58 +1.1
425,505 - Dshi_0433 0.58 -0.8
425,526 - Dshi_0433 0.60 -0.6
425,536 - Dshi_0433 0.61 -0.4
425,548 - Dshi_0433 0.63 -0.1
425,548 - Dshi_0433 0.63 -0.1
425,548 - Dshi_0433 0.63 -0.0
425,564 + Dshi_0433 0.64 -0.1
425,574 + Dshi_0433 0.65 -0.6
425,630 + Dshi_0433 0.71 -0.4
425,682 - Dshi_0433 0.76 -0.2
425,684 + Dshi_0433 0.76 +0.1
425,684 + Dshi_0433 0.76 +0.5
425,784 + Dshi_0433 0.86 +1.0
425,803 - Dshi_0433 0.88 +0.5
425,817 - Dshi_0433 0.90 -0.1
425,898 - +0.0
425,923 - -0.8
425,928 - -0.2
425,928 - -0.8
425,968 - +0.2
426,029 + Dshi_0434 0.11 +0.8
426,037 - Dshi_0434 0.12 +0.1
426,037 - Dshi_0434 0.12 -0.3
426,063 - Dshi_0434 0.15 -0.2
426,086 + Dshi_0434 0.17 +0.6
426,114 + Dshi_0434 0.20 +0.3
426,213 + Dshi_0434 0.31 +0.3
426,213 + Dshi_0434 0.31 +1.1
426,221 - Dshi_0434 0.32 +0.6
426,242 + Dshi_0434 0.34 -0.1
426,350 - Dshi_0434 0.45 +0.7
426,363 + Dshi_0434 0.47 +0.2
426,456 - Dshi_0434 0.57 +0.3
426,456 - Dshi_0434 0.57 +0.1
426,856 - -0.2
426,882 + -2.4
426,882 + -0.1

Or see this region's nucleotide sequence