Experiment: MoYLS4 with peroxynitrite 200uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0609 and DVU0610 overlap by 4 nucleotides DVU0610 and DVU0611 are separated by 24 nucleotides DVU0611 and DVU0612 are separated by 15 nucleotides
DVU0609: DVU0609 - lipoprotein, putative (TIGR), at 678,940 to 679,575
DVU0609
DVU0610: DVU0610 - conserved hypothetical protein (TIGR), at 679,572 to 680,492
DVU0610
DVU0611: DVU0611 - ABC transporter, ATP-binding protein (TIGR), at 680,517 to 681,344
DVU0611
DVU0612: DVU0612 - STAS domain protein (TIGR), at 681,360 to 682,565
DVU0612
Position (kb) 680
681
682 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 679.658 kb on - strand at 679.700 kb on + strand, within DVU0610 at 679.717 kb on - strand, within DVU0610 at 679.763 kb on - strand, within DVU0610 at 679.763 kb on - strand, within DVU0610 at 679.782 kb on - strand, within DVU0610 at 679.782 kb on - strand, within DVU0610 at 679.904 kb on - strand, within DVU0610 at 679.956 kb on - strand, within DVU0610 at 679.981 kb on + strand, within DVU0610 at 679.981 kb on + strand, within DVU0610 at 679.981 kb on + strand, within DVU0610 at 679.981 kb on + strand, within DVU0610 at 679.989 kb on - strand, within DVU0610 at 679.989 kb on - strand, within DVU0610 at 679.993 kb on + strand, within DVU0610 at 680.091 kb on + strand, within DVU0610 at 680.099 kb on - strand, within DVU0610 at 680.244 kb on + strand, within DVU0610 at 680.377 kb on - strand, within DVU0610 at 680.537 kb on + strand at 680.553 kb on + strand at 680.553 kb on + strand at 680.553 kb on + strand at 680.561 kb on - strand at 680.561 kb on - strand at 680.604 kb on - strand, within DVU0611 at 680.614 kb on + strand, within DVU0611 at 680.622 kb on - strand, within DVU0611 at 680.622 kb on - strand, within DVU0611 at 680.665 kb on - strand, within DVU0611 at 680.665 kb on - strand, within DVU0611 at 680.665 kb on - strand, within DVU0611 at 680.751 kb on - strand, within DVU0611 at 680.756 kb on - strand, within DVU0611 at 680.804 kb on + strand, within DVU0611 at 680.873 kb on - strand, within DVU0611 at 681.124 kb on - strand, within DVU0611 at 681.127 kb on + strand, within DVU0611 at 681.127 kb on + strand, within DVU0611 at 681.145 kb on - strand, within DVU0611 at 681.145 kb on - strand, within DVU0611 at 681.145 kb on - strand, within DVU0611 at 681.145 kb on - strand, within DVU0611 at 681.158 kb on - strand, within DVU0611 at 681.195 kb on - strand, within DVU0611 at 681.229 kb on + strand, within DVU0611 at 681.237 kb on - strand, within DVU0611 at 681.269 kb on - strand at 681.330 kb on + strand at 681.350 kb on + strand at 681.383 kb on - strand at 681.385 kb on + strand at 681.461 kb on + strand at 681.506 kb on - strand, within DVU0612 at 681.574 kb on - strand, within DVU0612 at 681.602 kb on + strand, within DVU0612 at 681.602 kb on + strand, within DVU0612 at 681.610 kb on - strand, within DVU0612 at 681.649 kb on + strand, within DVU0612 at 681.754 kb on + strand, within DVU0612 at 681.754 kb on + strand, within DVU0612 at 681.828 kb on - strand, within DVU0612 at 681.925 kb on - strand, within DVU0612 at 682.050 kb on - strand, within DVU0612 at 682.059 kb on - strand, within DVU0612 at 682.061 kb on + strand, within DVU0612 at 682.160 kb on - strand, within DVU0612 at 682.240 kb on - strand, within DVU0612 at 682.242 kb on + strand, within DVU0612 at 682.250 kb on - strand, within DVU0612 at 682.320 kb on - strand, within DVU0612
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with peroxynitrite 200uM remove 679,658 - -0.4 679,700 + DVU0610 0.14 -0.7 679,717 - DVU0610 0.16 +0.1 679,763 - DVU0610 0.21 -0.2 679,763 - DVU0610 0.21 -0.6 679,782 - DVU0610 0.23 -0.1 679,782 - DVU0610 0.23 -0.7 679,904 - DVU0610 0.36 -0.7 679,956 - DVU0610 0.42 -0.3 679,981 + DVU0610 0.44 -2.5 679,981 + DVU0610 0.44 -0.1 679,981 + DVU0610 0.44 +1.9 679,981 + DVU0610 0.44 -1.1 679,989 - DVU0610 0.45 -2.9 679,989 - DVU0610 0.45 +1.4 679,993 + DVU0610 0.46 +0.3 680,091 + DVU0610 0.56 -0.5 680,099 - DVU0610 0.57 -0.3 680,244 + DVU0610 0.73 -0.2 680,377 - DVU0610 0.87 -1.0 680,537 + +0.4 680,553 + +1.3 680,553 + -0.5 680,553 + +0.3 680,561 - +0.7 680,561 - +0.1 680,604 - DVU0611 0.11 -0.6 680,614 + DVU0611 0.12 -0.3 680,622 - DVU0611 0.13 -0.7 680,622 - DVU0611 0.13 -0.0 680,665 - DVU0611 0.18 -0.8 680,665 - DVU0611 0.18 -2.5 680,665 - DVU0611 0.18 -0.5 680,751 - DVU0611 0.28 +1.7 680,756 - DVU0611 0.29 -0.8 680,804 + DVU0611 0.35 -0.4 680,873 - DVU0611 0.43 -1.0 681,124 - DVU0611 0.73 +0.5 681,127 + DVU0611 0.74 -0.7 681,127 + DVU0611 0.74 +1.0 681,145 - DVU0611 0.76 -1.0 681,145 - DVU0611 0.76 -0.7 681,145 - DVU0611 0.76 -1.9 681,145 - DVU0611 0.76 -0.3 681,158 - DVU0611 0.77 +0.2 681,195 - DVU0611 0.82 -0.6 681,229 + DVU0611 0.86 +1.3 681,237 - DVU0611 0.87 +1.7 681,269 - -0.7 681,330 + +0.4 681,350 + +0.1 681,383 - +0.2 681,385 + -0.5 681,461 + -0.5 681,506 - DVU0612 0.12 -0.6 681,574 - DVU0612 0.18 -0.5 681,602 + DVU0612 0.20 +1.7 681,602 + DVU0612 0.20 -0.3 681,610 - DVU0612 0.21 +0.7 681,649 + DVU0612 0.24 +0.3 681,754 + DVU0612 0.33 +1.7 681,754 + DVU0612 0.33 -1.2 681,828 - DVU0612 0.39 -0.9 681,925 - DVU0612 0.47 +0.3 682,050 - DVU0612 0.57 -0.5 682,059 - DVU0612 0.58 -1.7 682,061 + DVU0612 0.58 -0.6 682,160 - DVU0612 0.66 +0.7 682,240 - DVU0612 0.73 +3.0 682,242 + DVU0612 0.73 -0.4 682,250 - DVU0612 0.74 -0.0 682,320 - DVU0612 0.80 +0.6
Or see this region's nucleotide sequence