Experiment: MoYLS4 with peroxynitrite 200uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0176 and modA are separated by 149 nucleotides modA and DVU0179 are separated by 204 nucleotides
DVU0176: DVU0176 - glycerophosphoryl diester phosphodiesterase family protein (TIGR), at 221,145 to 222,044
DVU0176
DVU0177: modA - molybdenum ABC transporter, periplasmic molybdenum-binding protein (TIGR), at 222,194 to 223,003
modA
DVU0179: DVU0179 - molybdenum-pterin binding domain protein/site-specific recombinase, phage integrase family (TIGR), at 223,208 to 224,605
DVU0179
Position (kb) 222
223
224 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 221.239 kb on + strand, within DVU0176 at 221.356 kb on + strand, within DVU0176 at 221.397 kb on - strand, within DVU0176 at 221.492 kb on + strand, within DVU0176 at 221.497 kb on + strand, within DVU0176 at 221.502 kb on + strand, within DVU0176 at 221.510 kb on - strand, within DVU0176 at 221.553 kb on + strand, within DVU0176 at 221.629 kb on + strand, within DVU0176 at 221.660 kb on - strand, within DVU0176 at 221.662 kb on + strand, within DVU0176 at 221.670 kb on - strand, within DVU0176 at 221.779 kb on - strand, within DVU0176 at 221.816 kb on + strand, within DVU0176 at 221.928 kb on + strand, within DVU0176 at 221.928 kb on - strand, within DVU0176 at 221.948 kb on + strand, within DVU0176 at 221.963 kb on - strand at 221.968 kb on - strand at 221.968 kb on - strand at 222.011 kb on + strand at 222.054 kb on - strand at 222.056 kb on + strand at 222.080 kb on - strand at 222.098 kb on + strand at 222.100 kb on + strand at 222.113 kb on + strand at 222.121 kb on - strand at 222.121 kb on - strand at 222.146 kb on + strand at 222.146 kb on + strand at 222.146 kb on + strand at 222.146 kb on + strand at 222.146 kb on + strand at 222.154 kb on - strand at 222.154 kb on - strand at 222.154 kb on - strand at 222.154 kb on - strand at 222.154 kb on - strand at 222.166 kb on + strand at 222.191 kb on + strand at 222.199 kb on - strand at 222.199 kb on - strand at 222.354 kb on + strand, within modA at 222.397 kb on - strand, within modA at 222.419 kb on - strand, within modA at 222.425 kb on + strand, within modA at 222.433 kb on - strand, within modA at 222.474 kb on - strand, within modA at 222.482 kb on - strand, within modA at 222.482 kb on - strand, within modA at 222.486 kb on - strand, within modA at 222.539 kb on - strand, within modA at 222.570 kb on + strand, within modA at 222.625 kb on + strand, within modA at 222.660 kb on + strand, within modA at 222.771 kb on - strand, within modA at 222.910 kb on - strand, within modA at 222.936 kb on - strand at 222.939 kb on + strand at 222.939 kb on + strand at 222.942 kb on - strand at 222.944 kb on - strand at 222.947 kb on - strand at 222.947 kb on - strand at 222.947 kb on - strand at 222.951 kb on + strand at 222.951 kb on + strand at 222.951 kb on + strand at 222.951 kb on + strand at 222.951 kb on + strand at 222.951 kb on + strand at 222.957 kb on - strand at 222.959 kb on - strand at 222.959 kb on - strand at 222.959 kb on - strand at 222.961 kb on + strand at 223.007 kb on - strand at 223.010 kb on + strand at 223.076 kb on + strand at 223.084 kb on - strand at 223.104 kb on + strand at 223.154 kb on - strand at 223.154 kb on - strand at 223.320 kb on + strand at 223.374 kb on + strand, within DVU0179 at 223.399 kb on + strand, within DVU0179 at 223.426 kb on + strand, within DVU0179 at 223.426 kb on + strand, within DVU0179 at 223.426 kb on + strand, within DVU0179 at 223.441 kb on - strand, within DVU0179 at 223.441 kb on - strand, within DVU0179 at 223.450 kb on + strand, within DVU0179 at 223.458 kb on - strand, within DVU0179 at 223.458 kb on - strand, within DVU0179 at 223.461 kb on + strand, within DVU0179 at 223.503 kb on - strand, within DVU0179 at 223.576 kb on + strand, within DVU0179 at 223.584 kb on - strand, within DVU0179 at 223.655 kb on - strand, within DVU0179 at 223.710 kb on - strand, within DVU0179 at 223.839 kb on + strand, within DVU0179 at 223.840 kb on + strand, within DVU0179 at 223.840 kb on + strand, within DVU0179 at 223.850 kb on + strand, within DVU0179 at 223.895 kb on + strand, within DVU0179 at 223.901 kb on - strand, within DVU0179 at 223.903 kb on - strand, within DVU0179 at 223.905 kb on + strand, within DVU0179 at 223.931 kb on + strand, within DVU0179
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with peroxynitrite 200uM remove 221,239 + DVU0176 0.10 -2.1 221,356 + DVU0176 0.23 -1.6 221,397 - DVU0176 0.28 -1.4 221,492 + DVU0176 0.39 -1.3 221,497 + DVU0176 0.39 -0.8 221,502 + DVU0176 0.40 -0.8 221,510 - DVU0176 0.41 -1.6 221,553 + DVU0176 0.45 -1.4 221,629 + DVU0176 0.54 +0.6 221,660 - DVU0176 0.57 -0.4 221,662 + DVU0176 0.57 -0.0 221,670 - DVU0176 0.58 -1.3 221,779 - DVU0176 0.70 -1.3 221,816 + DVU0176 0.75 -0.7 221,928 + DVU0176 0.87 +0.6 221,928 - DVU0176 0.87 -0.9 221,948 + DVU0176 0.89 -1.4 221,963 - +0.6 221,968 - -1.3 221,968 - -2.0 222,011 + -0.7 222,054 - -1.4 222,056 + -1.0 222,080 - -0.5 222,098 + -2.0 222,100 + +0.6 222,113 + -0.9 222,121 - -0.2 222,121 - -0.8 222,146 + -0.4 222,146 + -0.8 222,146 + -0.4 222,146 + -1.4 222,146 + +1.0 222,154 - -0.6 222,154 - -0.4 222,154 - -1.4 222,154 - -0.2 222,154 - -0.4 222,166 + +1.3 222,191 + -0.5 222,199 - +0.2 222,199 - -0.0 222,354 + modA DVU0177 0.20 -0.2 222,397 - modA DVU0177 0.25 -0.1 222,419 - modA DVU0177 0.28 -0.4 222,425 + modA DVU0177 0.29 -0.2 222,433 - modA DVU0177 0.30 -0.7 222,474 - modA DVU0177 0.35 +0.1 222,482 - modA DVU0177 0.36 -0.3 222,482 - modA DVU0177 0.36 -0.7 222,486 - modA DVU0177 0.36 -0.4 222,539 - modA DVU0177 0.43 -0.1 222,570 + modA DVU0177 0.46 +0.6 222,625 + modA DVU0177 0.53 -0.6 222,660 + modA DVU0177 0.58 +2.5 222,771 - modA DVU0177 0.71 +0.6 222,910 - modA DVU0177 0.88 +0.3 222,936 - +0.6 222,939 + -0.6 222,939 + +0.2 222,942 - +1.1 222,944 - -1.0 222,947 - -0.3 222,947 - -0.8 222,947 - +0.8 222,951 + -0.8 222,951 + +2.1 222,951 + -0.2 222,951 + -2.0 222,951 + +1.1 222,951 + -0.3 222,957 - -0.2 222,959 - -0.0 222,959 - +1.1 222,959 - -0.3 222,961 + -0.4 223,007 - -0.4 223,010 + +0.6 223,076 + -0.2 223,084 - -1.4 223,104 + -0.3 223,154 - -0.2 223,154 - +0.2 223,320 + +2.1 223,374 + DVU0179 0.12 -0.0 223,399 + DVU0179 0.14 -0.2 223,426 + DVU0179 0.16 -0.0 223,426 + DVU0179 0.16 -0.5 223,426 + DVU0179 0.16 +2.1 223,441 - DVU0179 0.17 -0.1 223,441 - DVU0179 0.17 -0.0 223,450 + DVU0179 0.17 +0.6 223,458 - DVU0179 0.18 +0.4 223,458 - DVU0179 0.18 +0.5 223,461 + DVU0179 0.18 -1.4 223,503 - DVU0179 0.21 -0.1 223,576 + DVU0179 0.26 +0.1 223,584 - DVU0179 0.27 -0.9 223,655 - DVU0179 0.32 +0.3 223,710 - DVU0179 0.36 -0.7 223,839 + DVU0179 0.45 +2.1 223,840 + DVU0179 0.45 -0.2 223,840 + DVU0179 0.45 -1.1 223,850 + DVU0179 0.46 -0.3 223,895 + DVU0179 0.49 +0.6 223,901 - DVU0179 0.50 -2.8 223,903 - DVU0179 0.50 -0.8 223,905 + DVU0179 0.50 +0.5 223,931 + DVU0179 0.52 +1.9
Or see this region's nucleotide sequence