Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0169

Experiment: MoYLS4 with peroxynitrite 200uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0168 and DVU0169 are separated by 169 nucleotidesDVU0169 and DVU0170 are separated by 432 nucleotides DVU0168: DVU0168 - oligopeptide/dipeptide ABC transporter, permease protein (TIGR), at 208,285 to 209,262 DVU0168 DVU0169: DVU0169 - oligopeptide/dipeptide ABC transporter, periplasmic oligopeptide/dipeptide-binding protein (TIGR), at 209,432 to 210,994 DVU0169 DVU0170: DVU0170 - methyl-accepting chemotaxis protein (TIGR), at 211,427 to 213,496 DVU0170 Position (kb) 209 210 211Strain fitness (log2 ratio) -2 -1 0 1 2 3at 208.438 kb on + strand, within DVU0168at 208.498 kb on + strand, within DVU0168at 208.501 kb on - strand, within DVU0168at 208.546 kb on + strand, within DVU0168at 208.630 kb on - strand, within DVU0168at 208.639 kb on + strand, within DVU0168at 208.718 kb on + strand, within DVU0168at 208.757 kb on + strand, within DVU0168at 208.889 kb on + strand, within DVU0168at 208.915 kb on - strand, within DVU0168at 209.050 kb on - strand, within DVU0168at 209.068 kb on + strand, within DVU0168at 209.125 kb on - strand, within DVU0168at 209.135 kb on - strand, within DVU0168at 209.135 kb on - strand, within DVU0168at 209.232 kb on + strandat 209.240 kb on - strandat 209.253 kb on + strandat 209.283 kb on - strandat 209.460 kb on + strandat 209.484 kb on + strandat 209.514 kb on + strandat 209.529 kb on + strandat 209.534 kb on + strandat 209.537 kb on - strandat 209.558 kb on + strandat 209.566 kb on - strandat 209.566 kb on - strandat 209.566 kb on - strandat 209.572 kb on + strandat 209.582 kb on + strandat 209.613 kb on + strand, within DVU0169at 209.638 kb on + strand, within DVU0169at 209.670 kb on + strand, within DVU0169at 209.675 kb on + strand, within DVU0169at 209.699 kb on + strand, within DVU0169at 209.724 kb on - strand, within DVU0169at 209.774 kb on - strand, within DVU0169at 209.799 kb on + strand, within DVU0169at 209.812 kb on - strand, within DVU0169at 209.822 kb on + strand, within DVU0169at 209.823 kb on + strand, within DVU0169at 209.823 kb on + strand, within DVU0169at 209.823 kb on + strand, within DVU0169at 209.823 kb on + strand, within DVU0169at 209.823 kb on + strand, within DVU0169at 209.823 kb on + strand, within DVU0169at 209.830 kb on + strand, within DVU0169at 209.831 kb on - strand, within DVU0169at 209.831 kb on - strand, within DVU0169at 209.831 kb on - strand, within DVU0169at 209.831 kb on - strand, within DVU0169at 209.831 kb on - strand, within DVU0169at 209.836 kb on + strand, within DVU0169at 209.844 kb on - strand, within DVU0169at 209.898 kb on + strand, within DVU0169at 210.051 kb on + strand, within DVU0169at 210.051 kb on + strand, within DVU0169at 210.051 kb on + strand, within DVU0169at 210.246 kb on + strand, within DVU0169at 210.261 kb on + strand, within DVU0169at 210.332 kb on - strand, within DVU0169at 210.394 kb on - strand, within DVU0169at 210.407 kb on + strand, within DVU0169at 210.407 kb on + strand, within DVU0169at 210.468 kb on + strand, within DVU0169at 210.506 kb on - strand, within DVU0169at 210.506 kb on - strand, within DVU0169at 210.506 kb on - strand, within DVU0169at 210.506 kb on - strand, within DVU0169at 210.557 kb on - strand, within DVU0169at 210.559 kb on + strand, within DVU0169at 210.560 kb on - strand, within DVU0169at 210.564 kb on + strand, within DVU0169at 210.572 kb on - strand, within DVU0169at 210.605 kb on - strand, within DVU0169at 210.605 kb on - strand, within DVU0169at 210.684 kb on - strand, within DVU0169at 210.722 kb on - strand, within DVU0169at 210.722 kb on - strand, within DVU0169at 210.724 kb on + strand, within DVU0169at 210.732 kb on - strand, within DVU0169at 210.744 kb on + strand, within DVU0169at 210.744 kb on + strand, within DVU0169at 210.744 kb on + strand, within DVU0169at 210.749 kb on + strand, within DVU0169at 210.908 kb on + strandat 211.023 kb on - strandat 211.056 kb on - strandat 211.097 kb on - strandat 211.204 kb on - strandat 211.211 kb on + strandat 211.214 kb on - strandat 211.214 kb on - strandat 211.219 kb on - strandat 211.224 kb on - strandat 211.226 kb on - strandat 211.326 kb on + strandat 211.449 kb on + strandat 211.477 kb on - strandat 211.498 kb on - strandat 211.500 kb on - strandat 211.548 kb on + strandat 211.548 kb on + strandat 211.566 kb on - strandat 211.571 kb on - strandat 211.588 kb on + strandat 211.601 kb on + strandat 211.620 kb on - strandat 211.690 kb on - strand, within DVU0170at 211.738 kb on + strand, within DVU0170at 211.746 kb on + strand, within DVU0170at 211.803 kb on - strand, within DVU0170at 211.803 kb on - strand, within DVU0170at 211.882 kb on + strand, within DVU0170

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with peroxynitrite 200uM
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208,438 + DVU0168 0.16 -1.0
208,498 + DVU0168 0.22 -1.0
208,501 - DVU0168 0.22 -1.1
208,546 + DVU0168 0.27 -0.0
208,630 - DVU0168 0.35 +1.6
208,639 + DVU0168 0.36 -1.0
208,718 + DVU0168 0.44 -1.0
208,757 + DVU0168 0.48 -1.0
208,889 + DVU0168 0.62 -0.4
208,915 - DVU0168 0.64 -0.4
209,050 - DVU0168 0.78 -1.6
209,068 + DVU0168 0.80 -0.6
209,125 - DVU0168 0.86 -0.6
209,135 - DVU0168 0.87 -1.2
209,135 - DVU0168 0.87 -1.2
209,232 + -1.5
209,240 - -2.4
209,253 + -0.4
209,283 - -0.8
209,460 + +1.6
209,484 + -1.0
209,514 + -1.2
209,529 + -2.0
209,534 + -1.2
209,537 - -0.2
209,558 + -0.7
209,566 - -1.2
209,566 - -1.3
209,566 - +0.6
209,572 + +0.6
209,582 + -1.1
209,613 + DVU0169 0.12 -2.4
209,638 + DVU0169 0.13 -0.7
209,670 + DVU0169 0.15 -1.7
209,675 + DVU0169 0.16 -0.6
209,699 + DVU0169 0.17 -0.4
209,724 - DVU0169 0.19 -1.0
209,774 - DVU0169 0.22 +0.4
209,799 + DVU0169 0.23 -0.5
209,812 - DVU0169 0.24 -0.6
209,822 + DVU0169 0.25 -0.8
209,823 + DVU0169 0.25 -1.1
209,823 + DVU0169 0.25 -1.0
209,823 + DVU0169 0.25 -0.4
209,823 + DVU0169 0.25 -0.4
209,823 + DVU0169 0.25 -0.3
209,823 + DVU0169 0.25 -0.4
209,830 + DVU0169 0.25 -1.5
209,831 - DVU0169 0.26 -0.8
209,831 - DVU0169 0.26 -0.4
209,831 - DVU0169 0.26 -0.9
209,831 - DVU0169 0.26 -0.7
209,831 - DVU0169 0.26 -0.8
209,836 + DVU0169 0.26 -0.8
209,844 - DVU0169 0.26 -1.4
209,898 + DVU0169 0.30 -1.0
210,051 + DVU0169 0.40 -0.5
210,051 + DVU0169 0.40 +0.4
210,051 + DVU0169 0.40 -2.3
210,246 + DVU0169 0.52 -0.5
210,261 + DVU0169 0.53 -2.0
210,332 - DVU0169 0.58 -0.7
210,394 - DVU0169 0.62 -0.9
210,407 + DVU0169 0.62 -0.4
210,407 + DVU0169 0.62 -0.4
210,468 + DVU0169 0.66 -0.8
210,506 - DVU0169 0.69 -0.2
210,506 - DVU0169 0.69 -0.7
210,506 - DVU0169 0.69 +0.6
210,506 - DVU0169 0.69 -1.7
210,557 - DVU0169 0.72 +0.6
210,559 + DVU0169 0.72 -0.8
210,560 - DVU0169 0.72 -0.3
210,564 + DVU0169 0.72 -1.0
210,572 - DVU0169 0.73 -1.2
210,605 - DVU0169 0.75 -1.1
210,605 - DVU0169 0.75 +0.6
210,684 - DVU0169 0.80 -1.3
210,722 - DVU0169 0.83 +2.2
210,722 - DVU0169 0.83 -0.6
210,724 + DVU0169 0.83 -0.9
210,732 - DVU0169 0.83 -1.0
210,744 + DVU0169 0.84 +0.6
210,744 + DVU0169 0.84 -0.4
210,744 + DVU0169 0.84 +0.6
210,749 + DVU0169 0.84 -0.2
210,908 + -1.0
211,023 - -0.2
211,056 - -0.8
211,097 - +0.6
211,204 - +0.8
211,211 + -0.3
211,214 - -0.2
211,214 - -0.3
211,219 - +1.0
211,224 - -0.6
211,226 - -0.4
211,326 + +0.2
211,449 + +2.9
211,477 - -0.5
211,498 - -0.8
211,500 - +1.2
211,548 + -0.6
211,548 + -1.0
211,566 - +0.0
211,571 - +0.6
211,588 + -0.0
211,601 + -0.4
211,620 - -0.4
211,690 - DVU0170 0.13 -0.3
211,738 + DVU0170 0.15 -0.5
211,746 + DVU0170 0.15 +0.7
211,803 - DVU0170 0.18 -1.2
211,803 - DVU0170 0.18 -0.4
211,882 + DVU0170 0.22 +0.6

Or see this region's nucleotide sequence