Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06514

Experiment: 4-Methyl-2-oxopentanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06513 and H281DRAFT_06514 are separated by 78 nucleotidesH281DRAFT_06514 and H281DRAFT_06515 are separated by 634 nucleotides H281DRAFT_06513: H281DRAFT_06513 - Acyl-CoA reductase, at 61,103 to 62,560 _06513 H281DRAFT_06514: H281DRAFT_06514 - Glycine/D-amino acid oxidase (deaminating), at 62,639 to 63,964 _06514 H281DRAFT_06515: H281DRAFT_06515 - uncharacterized domain 1-containing protein, at 64,599 to 65,054 _06515 Position (kb) 62 63 64Strain fitness (log2 ratio) -1 0 1at 62.169 kb on + strand, within H281DRAFT_06513at 62.692 kb on - strandat 63.658 kb on - strand, within H281DRAFT_06514at 63.812 kb on + strand, within H281DRAFT_06514at 63.875 kb on + strandat 64.176 kb on + strandat 64.176 kb on + strandat 64.262 kb on - strandat 64.360 kb on + strandat 64.361 kb on - strandat 64.369 kb on + strandat 64.486 kb on - strandat 64.486 kb on - strandat 64.646 kb on - strand, within H281DRAFT_06515at 64.647 kb on + strand, within H281DRAFT_06515at 64.750 kb on - strand, within H281DRAFT_06515at 64.788 kb on - strand, within H281DRAFT_06515at 64.790 kb on - strand, within H281DRAFT_06515at 64.888 kb on + strand, within H281DRAFT_06515at 64.889 kb on - strand, within H281DRAFT_06515at 64.889 kb on - strand, within H281DRAFT_06515

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C)
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62,169 + H281DRAFT_06513 0.73 +0.1
62,692 - +0.1
63,658 - H281DRAFT_06514 0.77 +1.0
63,812 + H281DRAFT_06514 0.88 -0.1
63,875 + +0.8
64,176 + -0.2
64,176 + +0.6
64,262 - +0.4
64,360 + +0.3
64,361 - -0.1
64,369 + +0.6
64,486 - -0.3
64,486 - +1.2
64,646 - H281DRAFT_06515 0.10 +0.1
64,647 + H281DRAFT_06515 0.11 +1.0
64,750 - H281DRAFT_06515 0.33 -0.2
64,788 - H281DRAFT_06515 0.41 +0.1
64,790 - H281DRAFT_06515 0.42 -0.4
64,888 + H281DRAFT_06515 0.63 -0.1
64,889 - H281DRAFT_06515 0.64 +0.1
64,889 - H281DRAFT_06515 0.64 +0.1

Or see this region's nucleotide sequence