Experiment: 4-Methyl-2-oxopentanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06067 and H281DRAFT_06068 are separated by 52 nucleotides H281DRAFT_06068 and H281DRAFT_06069 overlap by 11 nucleotides H281DRAFT_06069 and H281DRAFT_06070 overlap by 4 nucleotides
H281DRAFT_06067: H281DRAFT_06067 - tryptophan synthase, beta chain, at 81,733 to 82,926
_06067
H281DRAFT_06068: H281DRAFT_06068 - phosphoribosylanthranilate isomerase, at 82,979 to 83,704
_06068
H281DRAFT_06069: H281DRAFT_06069 - tRNA pseudouridine38-40 synthase, at 83,694 to 84,512
_06069
H281DRAFT_06070: H281DRAFT_06070 - FimV C-terminal domain-containing protein, at 84,509 to 86,827
_06070
Position (kb) 82
83
84 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 82.002 kb on - strand, within H281DRAFT_06067 at 82.064 kb on + strand, within H281DRAFT_06067 at 82.064 kb on + strand, within H281DRAFT_06067 at 82.065 kb on - strand, within H281DRAFT_06067 at 82.065 kb on - strand, within H281DRAFT_06067 at 82.068 kb on + strand, within H281DRAFT_06067 at 82.068 kb on + strand, within H281DRAFT_06067 at 82.068 kb on + strand, within H281DRAFT_06067 at 82.069 kb on - strand, within H281DRAFT_06067 at 82.069 kb on - strand, within H281DRAFT_06067 at 82.207 kb on - strand, within H281DRAFT_06067 at 82.360 kb on - strand, within H281DRAFT_06067 at 82.361 kb on + strand, within H281DRAFT_06067 at 82.361 kb on + strand, within H281DRAFT_06067 at 82.361 kb on + strand, within H281DRAFT_06067 at 82.361 kb on + strand, within H281DRAFT_06067 at 82.362 kb on - strand, within H281DRAFT_06067 at 82.362 kb on - strand, within H281DRAFT_06067 at 82.362 kb on - strand, within H281DRAFT_06067 at 82.362 kb on - strand, within H281DRAFT_06067 at 82.362 kb on - strand, within H281DRAFT_06067 at 82.362 kb on - strand, within H281DRAFT_06067 at 82.362 kb on - strand, within H281DRAFT_06067 at 82.520 kb on + strand, within H281DRAFT_06067 at 82.520 kb on + strand, within H281DRAFT_06067 at 82.520 kb on + strand, within H281DRAFT_06067 at 82.520 kb on + strand, within H281DRAFT_06067 at 82.521 kb on - strand, within H281DRAFT_06067 at 82.521 kb on - strand, within H281DRAFT_06067 at 82.659 kb on + strand, within H281DRAFT_06067 at 82.660 kb on - strand, within H281DRAFT_06067 at 82.769 kb on + strand, within H281DRAFT_06067 at 82.787 kb on + strand, within H281DRAFT_06067 at 82.838 kb on - strand at 82.838 kb on - strand at 82.939 kb on + strand at 82.940 kb on - strand at 83.057 kb on + strand at 83.057 kb on + strand, within H281DRAFT_06068 at 83.176 kb on + strand, within H281DRAFT_06068 at 83.177 kb on - strand, within H281DRAFT_06068 at 83.257 kb on - strand, within H281DRAFT_06068 at 83.273 kb on + strand, within H281DRAFT_06068 at 83.571 kb on - strand, within H281DRAFT_06068 at 83.724 kb on + strand at 83.725 kb on - strand at 83.730 kb on - strand at 83.800 kb on + strand, within H281DRAFT_06069 at 83.801 kb on - strand, within H281DRAFT_06069 at 83.900 kb on - strand at 84.103 kb on - strand, within H281DRAFT_06069 at 84.178 kb on + strand, within H281DRAFT_06069 at 84.179 kb on - strand, within H281DRAFT_06069 at 84.179 kb on - strand, within H281DRAFT_06069 at 84.184 kb on + strand, within H281DRAFT_06069 at 84.185 kb on - strand at 84.185 kb on - strand, within H281DRAFT_06069 at 84.185 kb on - strand, within H281DRAFT_06069 at 84.185 kb on - strand, within H281DRAFT_06069 at 84.185 kb on - strand, within H281DRAFT_06069 at 84.485 kb on - strand at 84.631 kb on - strand at 84.631 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C) remove 82,002 - H281DRAFT_06067 0.23 -2.2 82,064 + H281DRAFT_06067 0.28 -3.6 82,064 + H281DRAFT_06067 0.28 -3.8 82,065 - H281DRAFT_06067 0.28 -2.2 82,065 - H281DRAFT_06067 0.28 -1.3 82,068 + H281DRAFT_06067 0.28 -3.6 82,068 + H281DRAFT_06067 0.28 -1.8 82,068 + H281DRAFT_06067 0.28 -3.7 82,069 - H281DRAFT_06067 0.28 -2.3 82,069 - H281DRAFT_06067 0.28 -3.5 82,207 - H281DRAFT_06067 0.40 -3.0 82,360 - H281DRAFT_06067 0.53 -4.1 82,361 + H281DRAFT_06067 0.53 -2.3 82,361 + H281DRAFT_06067 0.53 -2.8 82,361 + H281DRAFT_06067 0.53 -4.5 82,361 + H281DRAFT_06067 0.53 -1.2 82,362 - H281DRAFT_06067 0.53 -3.8 82,362 - H281DRAFT_06067 0.53 -2.3 82,362 - H281DRAFT_06067 0.53 -4.0 82,362 - H281DRAFT_06067 0.53 -3.9 82,362 - H281DRAFT_06067 0.53 -3.1 82,362 - H281DRAFT_06067 0.53 -4.6 82,362 - H281DRAFT_06067 0.53 -2.0 82,520 + H281DRAFT_06067 0.66 -4.4 82,520 + H281DRAFT_06067 0.66 -3.0 82,520 + H281DRAFT_06067 0.66 -3.4 82,520 + H281DRAFT_06067 0.66 -2.6 82,521 - H281DRAFT_06067 0.66 -4.5 82,521 - H281DRAFT_06067 0.66 -5.0 82,659 + H281DRAFT_06067 0.78 -3.9 82,660 - H281DRAFT_06067 0.78 -2.3 82,769 + H281DRAFT_06067 0.87 -4.4 82,787 + H281DRAFT_06067 0.88 -3.8 82,838 - -3.4 82,838 - -4.3 82,939 + -1.5 82,940 - -0.3 83,057 + -0.8 83,057 + H281DRAFT_06068 0.11 -2.3 83,176 + H281DRAFT_06068 0.27 -3.5 83,177 - H281DRAFT_06068 0.27 -4.7 83,257 - H281DRAFT_06068 0.38 -3.1 83,273 + H281DRAFT_06068 0.40 -4.0 83,571 - H281DRAFT_06068 0.82 -2.9 83,724 + -0.6 83,725 - -0.1 83,730 - +0.9 83,800 + H281DRAFT_06069 0.13 +0.5 83,801 - H281DRAFT_06069 0.13 -0.5 83,900 - +0.0 84,103 - H281DRAFT_06069 0.50 -0.5 84,178 + H281DRAFT_06069 0.59 +0.5 84,179 - H281DRAFT_06069 0.59 +0.4 84,179 - H281DRAFT_06069 0.59 +0.4 84,184 + H281DRAFT_06069 0.60 +0.2 84,185 - +1.4 84,185 - H281DRAFT_06069 0.60 +0.6 84,185 - H281DRAFT_06069 0.60 +1.2 84,185 - H281DRAFT_06069 0.60 -1.0 84,185 - H281DRAFT_06069 0.60 +0.2 84,485 - +0.0 84,631 - +0.6 84,631 - +0.8
Or see this region's nucleotide sequence