Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06014

Experiment: 4-Methyl-2-oxopentanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06013 and H281DRAFT_06014 are separated by 88 nucleotidesH281DRAFT_06014 and H281DRAFT_06015 are separated by 343 nucleotides H281DRAFT_06013: H281DRAFT_06013 - O-sialoglycoprotein endopeptidase, at 15,733 to 16,761 _06013 H281DRAFT_06014: H281DRAFT_06014 - GTP cyclohydrolase I, at 16,850 to 17,656 _06014 H281DRAFT_06015: H281DRAFT_06015 - 1-deoxy-D-xylulose-5-phosphate synthase, at 18,000 to 19,907 _06015 Position (kb) 16 17 18Strain fitness (log2 ratio) -2 -1 0 1at 16.885 kb on - strandat 16.932 kb on + strand, within H281DRAFT_06014at 16.932 kb on + strand, within H281DRAFT_06014at 16.932 kb on + strand, within H281DRAFT_06014at 16.932 kb on + strand, within H281DRAFT_06014at 16.932 kb on + strand, within H281DRAFT_06014at 16.933 kb on - strand, within H281DRAFT_06014at 16.933 kb on - strand, within H281DRAFT_06014at 16.933 kb on - strand, within H281DRAFT_06014at 17.010 kb on + strand, within H281DRAFT_06014at 17.248 kb on + strand, within H281DRAFT_06014at 17.278 kb on - strand, within H281DRAFT_06014at 17.278 kb on - strand, within H281DRAFT_06014at 17.328 kb on + strand, within H281DRAFT_06014at 17.458 kb on + strand, within H281DRAFT_06014at 17.458 kb on + strand, within H281DRAFT_06014at 17.458 kb on + strand, within H281DRAFT_06014at 17.458 kb on + strand, within H281DRAFT_06014at 17.458 kb on + strand, within H281DRAFT_06014at 17.458 kb on + strand, within H281DRAFT_06014at 17.459 kb on - strand, within H281DRAFT_06014at 17.459 kb on - strand, within H281DRAFT_06014at 17.459 kb on - strand, within H281DRAFT_06014at 17.459 kb on - strand, within H281DRAFT_06014at 17.459 kb on - strand, within H281DRAFT_06014at 17.459 kb on - strand, within H281DRAFT_06014at 17.711 kb on + strandat 17.712 kb on - strandat 17.743 kb on + strandat 17.892 kb on + strandat 17.892 kb on + strandat 17.893 kb on - strandat 17.921 kb on + strandat 17.987 kb on + strandat 17.988 kb on - strandat 17.988 kb on - strandat 17.988 kb on - strandat 17.988 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C)
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16,885 - +0.2
16,932 + H281DRAFT_06014 0.10 -0.7
16,932 + H281DRAFT_06014 0.10 +0.2
16,932 + H281DRAFT_06014 0.10 -0.4
16,932 + H281DRAFT_06014 0.10 +0.1
16,932 + H281DRAFT_06014 0.10 -0.5
16,933 - H281DRAFT_06014 0.10 -0.0
16,933 - H281DRAFT_06014 0.10 +0.7
16,933 - H281DRAFT_06014 0.10 -1.8
17,010 + H281DRAFT_06014 0.20 +0.1
17,248 + H281DRAFT_06014 0.49 +0.1
17,278 - H281DRAFT_06014 0.53 +0.6
17,278 - H281DRAFT_06014 0.53 +0.7
17,328 + H281DRAFT_06014 0.59 -1.4
17,458 + H281DRAFT_06014 0.75 +0.6
17,458 + H281DRAFT_06014 0.75 -0.0
17,458 + H281DRAFT_06014 0.75 +0.8
17,458 + H281DRAFT_06014 0.75 +0.5
17,458 + H281DRAFT_06014 0.75 +1.0
17,458 + H281DRAFT_06014 0.75 +0.1
17,459 - H281DRAFT_06014 0.75 -0.2
17,459 - H281DRAFT_06014 0.75 +0.4
17,459 - H281DRAFT_06014 0.75 +0.8
17,459 - H281DRAFT_06014 0.75 +0.2
17,459 - H281DRAFT_06014 0.75 +1.1
17,459 - H281DRAFT_06014 0.75 +0.3
17,711 + +0.4
17,712 - -0.8
17,743 + -0.1
17,892 + +0.5
17,892 + -0.1
17,893 - +0.6
17,921 + +0.5
17,987 + -1.3
17,988 - -0.1
17,988 - +0.1
17,988 - +0.4
17,988 - +0.0

Or see this region's nucleotide sequence