Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05922

Experiment: 4-Methyl-2-oxopentanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05921 and H281DRAFT_05922 are separated by 130 nucleotidesH281DRAFT_05922 and H281DRAFT_05923 are separated by 388 nucleotides H281DRAFT_05921: H281DRAFT_05921 - Sugar phosphate permease, at 54,638 to 55,990 _05921 H281DRAFT_05922: H281DRAFT_05922 - hypothetical protein, at 56,121 to 56,456 _05922 H281DRAFT_05923: H281DRAFT_05923 - EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant), at 56,845 to 57,630 _05923 Position (kb) 56 57Strain fitness (log2 ratio) -2 -1 0 1at 55.262 kb on - strand, within H281DRAFT_05921at 55.898 kb on + strandat 55.899 kb on - strandat 56.111 kb on + strandat 56.190 kb on - strand, within H281DRAFT_05922at 56.296 kb on - strand, within H281DRAFT_05922at 56.583 kb on + strandat 56.583 kb on + strandat 56.675 kb on + strandat 56.881 kb on - strandat 56.909 kb on + strandat 56.910 kb on - strandat 56.992 kb on - strand, within H281DRAFT_05923at 57.176 kb on + strand, within H281DRAFT_05923at 57.176 kb on + strand, within H281DRAFT_05923at 57.177 kb on - strand, within H281DRAFT_05923at 57.177 kb on - strand, within H281DRAFT_05923at 57.243 kb on + strand, within H281DRAFT_05923

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C)
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55,262 - H281DRAFT_05921 0.46 +0.2
55,898 + -0.2
55,899 - -1.3
56,111 + +0.3
56,190 - H281DRAFT_05922 0.21 -0.7
56,296 - H281DRAFT_05922 0.52 -0.4
56,583 + +0.8
56,583 + +0.3
56,675 + -0.4
56,881 - +1.4
56,909 + +0.1
56,910 - +0.9
56,992 - H281DRAFT_05923 0.19 +0.4
57,176 + H281DRAFT_05923 0.42 -0.4
57,176 + H281DRAFT_05923 0.42 +1.2
57,177 - H281DRAFT_05923 0.42 -1.9
57,177 - H281DRAFT_05923 0.42 -0.4
57,243 + H281DRAFT_05923 0.51 -0.1

Or see this region's nucleotide sequence