Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05725

Experiment: 4-Methyl-2-oxopentanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05724 and H281DRAFT_05725 are separated by 131 nucleotides H281DRAFT_05724: H281DRAFT_05724 - 3-oxo-5,6-didehydrosuberyl-CoA semialdehyde dehydrogenase PaaZ (EC:1.2.1.91) (from data), at 143,215 to 144,915 _05724 H281DRAFT_05725: H281DRAFT_05725 - 2,3-dehydroadipyl-CoA hydratase / enoyl-CoA hydratase (EC 4.2.1.17) (from data), at 145,047 to 145,823 _05725 Position (kb) 145 146Strain fitness (log2 ratio) -1 0 1at 144.127 kb on + strand, within H281DRAFT_05724at 144.166 kb on + strand, within H281DRAFT_05724at 144.166 kb on + strand, within H281DRAFT_05724at 144.431 kb on + strand, within H281DRAFT_05724at 144.431 kb on + strand, within H281DRAFT_05724at 144.522 kb on + strand, within H281DRAFT_05724at 144.522 kb on + strand, within H281DRAFT_05724at 144.522 kb on + strand, within H281DRAFT_05724at 144.660 kb on + strand, within H281DRAFT_05724at 144.697 kb on + strand, within H281DRAFT_05724at 144.698 kb on - strand, within H281DRAFT_05724at 144.933 kb on - strandat 144.954 kb on - strandat 144.954 kb on - strandat 144.957 kb on - strandat 144.957 kb on - strandat 144.993 kb on - strandat 144.996 kb on - strandat 144.996 kb on - strandat 144.996 kb on - strandat 144.996 kb on - strandat 144.996 kb on - strandat 144.996 kb on - strandat 145.036 kb on + strandat 145.036 kb on + strandat 145.037 kb on - strandat 145.053 kb on + strandat 145.264 kb on - strand, within H281DRAFT_05725at 145.264 kb on - strand, within H281DRAFT_05725at 145.269 kb on + strand, within H281DRAFT_05725at 145.269 kb on + strand, within H281DRAFT_05725at 145.269 kb on + strand, within H281DRAFT_05725at 145.269 kb on + strand, within H281DRAFT_05725at 145.269 kb on + strand, within H281DRAFT_05725at 145.269 kb on + strand, within H281DRAFT_05725at 145.269 kb on + strandat 145.270 kb on - strand, within H281DRAFT_05725at 145.270 kb on - strand, within H281DRAFT_05725at 145.271 kb on + strand, within H281DRAFT_05725at 145.272 kb on - strand, within H281DRAFT_05725at 145.272 kb on - strand, within H281DRAFT_05725at 145.281 kb on + strand, within H281DRAFT_05725at 145.282 kb on - strand, within H281DRAFT_05725at 145.282 kb on - strand, within H281DRAFT_05725at 145.282 kb on - strand, within H281DRAFT_05725at 145.282 kb on - strand, within H281DRAFT_05725at 145.293 kb on + strandat 145.293 kb on + strand, within H281DRAFT_05725at 145.294 kb on - strand, within H281DRAFT_05725at 145.294 kb on - strand, within H281DRAFT_05725at 145.294 kb on - strand, within H281DRAFT_05725at 145.304 kb on + strand, within H281DRAFT_05725at 145.304 kb on + strand, within H281DRAFT_05725at 145.305 kb on - strand, within H281DRAFT_05725at 145.331 kb on + strand, within H281DRAFT_05725at 145.331 kb on + strand, within H281DRAFT_05725at 145.332 kb on - strand, within H281DRAFT_05725at 145.509 kb on - strand, within H281DRAFT_05725at 145.542 kb on - strand, within H281DRAFT_05725at 145.542 kb on - strand, within H281DRAFT_05725at 145.635 kb on - strand, within H281DRAFT_05725at 145.824 kb on + strandat 145.824 kb on + strandat 145.824 kb on + strandat 145.824 kb on + strandat 145.839 kb on - strandat 146.002 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C)
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144,127 + H281DRAFT_05724 0.54 +0.6
144,166 + H281DRAFT_05724 0.56 -0.2
144,166 + H281DRAFT_05724 0.56 +0.5
144,431 + H281DRAFT_05724 0.71 +0.7
144,431 + H281DRAFT_05724 0.71 +0.8
144,522 + H281DRAFT_05724 0.77 +1.0
144,522 + H281DRAFT_05724 0.77 +0.7
144,522 + H281DRAFT_05724 0.77 +0.5
144,660 + H281DRAFT_05724 0.85 +0.8
144,697 + H281DRAFT_05724 0.87 +0.5
144,698 - H281DRAFT_05724 0.87 +0.6
144,933 - +0.1
144,954 - -0.6
144,954 - -0.0
144,957 - +0.2
144,957 - +0.4
144,993 - +0.6
144,996 - -0.3
144,996 - -1.0
144,996 - -0.6
144,996 - -0.0
144,996 - -0.3
144,996 - -0.5
145,036 + -0.1
145,036 + +0.0
145,037 - +0.1
145,053 + +0.3
145,264 - H281DRAFT_05725 0.28 +0.6
145,264 - H281DRAFT_05725 0.28 +0.4
145,269 + H281DRAFT_05725 0.29 +0.4
145,269 + H281DRAFT_05725 0.29 +0.9
145,269 + H281DRAFT_05725 0.29 +1.0
145,269 + H281DRAFT_05725 0.29 +0.4
145,269 + H281DRAFT_05725 0.29 +1.0
145,269 + H281DRAFT_05725 0.29 +0.7
145,269 + +0.7
145,270 - H281DRAFT_05725 0.29 +1.0
145,270 - H281DRAFT_05725 0.29 +0.9
145,271 + H281DRAFT_05725 0.29 +1.2
145,272 - H281DRAFT_05725 0.29 +1.0
145,272 - H281DRAFT_05725 0.29 +0.4
145,281 + H281DRAFT_05725 0.30 +0.5
145,282 - H281DRAFT_05725 0.30 +0.6
145,282 - H281DRAFT_05725 0.30 +0.5
145,282 - H281DRAFT_05725 0.30 +0.5
145,282 - H281DRAFT_05725 0.30 +0.7
145,293 + +0.3
145,293 + H281DRAFT_05725 0.32 +0.4
145,294 - H281DRAFT_05725 0.32 +0.9
145,294 - H281DRAFT_05725 0.32 +0.3
145,294 - H281DRAFT_05725 0.32 +0.0
145,304 + H281DRAFT_05725 0.33 -0.7
145,304 + H281DRAFT_05725 0.33 +0.8
145,305 - H281DRAFT_05725 0.33 +0.5
145,331 + H281DRAFT_05725 0.37 +1.0
145,331 + H281DRAFT_05725 0.37 +1.2
145,332 - H281DRAFT_05725 0.37 +0.9
145,509 - H281DRAFT_05725 0.59 +1.1
145,542 - H281DRAFT_05725 0.64 +0.7
145,542 - H281DRAFT_05725 0.64 +0.8
145,635 - H281DRAFT_05725 0.76 +1.1
145,824 + +0.3
145,824 + -0.1
145,824 + -0.0
145,824 + +0.5
145,839 - -0.6
146,002 - -0.6

Or see this region's nucleotide sequence