Experiment: 4-Methyl-2-oxopentanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05606 and H281DRAFT_05607 are separated by 9 nucleotides H281DRAFT_05607 and H281DRAFT_05608 are separated by 35 nucleotides H281DRAFT_05608 and H281DRAFT_05609 are separated by 93 nucleotides H281DRAFT_05609 and H281DRAFT_05610 are separated by 254 nucleotides
H281DRAFT_05606: H281DRAFT_05606 - diaminopimelate decarboxylase, at 26,193 to 27,455
_05606
H281DRAFT_05607: H281DRAFT_05607 - hypothetical protein, at 27,465 to 27,821
_05607
H281DRAFT_05608: H281DRAFT_05608 - CyaY protein, at 27,857 to 28,174
_05608
H281DRAFT_05609: H281DRAFT_05609 - penicillin-binding protein 1A, at 28,268 to 30,661
_05609
H281DRAFT_05610: H281DRAFT_05610 - hypothetical protein, at 30,916 to 31,908
_05610
Position (kb) 28
29
30
31 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 27.467 kb on - strand at 27.467 kb on - strand at 27.628 kb on - strand, within H281DRAFT_05607 at 27.628 kb on - strand, within H281DRAFT_05607 at 27.628 kb on - strand, within H281DRAFT_05607 at 27.836 kb on - strand at 27.840 kb on - strand at 27.853 kb on + strand at 27.872 kb on + strand at 27.872 kb on + strand at 28.192 kb on + strand at 28.201 kb on - strand at 28.201 kb on - strand at 28.420 kb on - strand at 28.420 kb on - strand at 28.738 kb on - strand, within H281DRAFT_05609 at 28.805 kb on + strand, within H281DRAFT_05609 at 29.701 kb on - strand, within H281DRAFT_05609 at 29.881 kb on - strand, within H281DRAFT_05609 at 30.112 kb on - strand, within H281DRAFT_05609 at 30.662 kb on - strand at 30.663 kb on + strand at 30.663 kb on + strand at 30.664 kb on - strand at 30.664 kb on - strand at 30.664 kb on - strand at 30.664 kb on - strand at 30.664 kb on - strand at 30.691 kb on + strand at 30.737 kb on + strand at 30.737 kb on + strand at 30.737 kb on + strand at 30.737 kb on + strand at 30.738 kb on - strand at 30.738 kb on - strand at 30.774 kb on + strand at 30.774 kb on + strand at 30.774 kb on + strand at 30.775 kb on - strand at 31.084 kb on - strand, within H281DRAFT_05610 at 31.558 kb on + strand, within H281DRAFT_05610 at 31.558 kb on + strand, within H281DRAFT_05610 at 31.559 kb on - strand, within H281DRAFT_05610
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C) remove 27,467 - +0.2 27,467 - -0.9 27,628 - H281DRAFT_05607 0.46 -0.4 27,628 - H281DRAFT_05607 0.46 -0.1 27,628 - H281DRAFT_05607 0.46 -0.3 27,836 - +0.3 27,840 - -3.1 27,853 + -0.9 27,872 + +1.7 27,872 + -0.2 28,192 + +0.3 28,201 - -0.2 28,201 - +0.1 28,420 - +0.2 28,420 - +0.5 28,738 - H281DRAFT_05609 0.20 -1.4 28,805 + H281DRAFT_05609 0.22 -0.1 29,701 - H281DRAFT_05609 0.60 -1.3 29,881 - H281DRAFT_05609 0.67 +1.1 30,112 - H281DRAFT_05609 0.77 -1.1 30,662 - +0.1 30,663 + -1.1 30,663 + +1.2 30,664 - -0.4 30,664 - +0.6 30,664 - +0.4 30,664 - -0.2 30,664 - +0.0 30,691 + -0.2 30,737 + -0.2 30,737 + -0.6 30,737 + +1.2 30,737 + +0.1 30,738 - +0.5 30,738 - -0.1 30,774 + +0.3 30,774 + -0.8 30,774 + -1.2 30,775 - +0.4 31,084 - H281DRAFT_05610 0.17 -1.2 31,558 + H281DRAFT_05610 0.65 +0.1 31,558 + H281DRAFT_05610 0.65 -0.2 31,559 - H281DRAFT_05610 0.65 +0.9
Or see this region's nucleotide sequence