Experiment: 4-Methyl-2-oxopentanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05496 and H281DRAFT_05497 are separated by 31 nucleotides H281DRAFT_05497 and H281DRAFT_05498 overlap by 10 nucleotides H281DRAFT_05498 and H281DRAFT_05499 are separated by 16 nucleotides H281DRAFT_05499 and H281DRAFT_05500 are separated by 10 nucleotides
H281DRAFT_05496: H281DRAFT_05496 - Acetoin utilization deacetylase AcuC, at 75,824 to 76,849
_05496
H281DRAFT_05497: H281DRAFT_05497 - 3-oxoacyl-[acyl-carrier protein] reductase, at 76,881 to 77,621
_05497
H281DRAFT_05498: H281DRAFT_05498 - branched chain amino acid aminotransferase apoenzyme (EC 2.6.1.42), at 77,612 to 78,538
_05498
H281DRAFT_05499: H281DRAFT_05499 - putative spermidine/putrescine transport system permease protein, at 78,555 to 79,370
_05499
H281DRAFT_05500: H281DRAFT_05500 - putative spermidine/putrescine transport system permease protein, at 79,381 to 80,736
_05500
Position (kb)
77
78
79 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 76.627 kb on - strand, within H281DRAFT_05496 at 76.627 kb on - strand, within H281DRAFT_05496 at 76.646 kb on + strand, within H281DRAFT_05496 at 76.646 kb on + strand, within H281DRAFT_05496 at 76.646 kb on + strand, within H281DRAFT_05496 at 76.647 kb on - strand, within H281DRAFT_05496 at 76.647 kb on - strand, within H281DRAFT_05496 at 76.650 kb on + strand, within H281DRAFT_05496 at 76.660 kb on + strand, within H281DRAFT_05496 at 76.936 kb on - strand at 76.955 kb on - strand, within H281DRAFT_05497 at 76.995 kb on + strand, within H281DRAFT_05497 at 77.070 kb on + strand, within H281DRAFT_05497 at 77.070 kb on + strand, within H281DRAFT_05497 at 77.071 kb on - strand, within H281DRAFT_05497 at 77.138 kb on - strand, within H281DRAFT_05497 at 77.575 kb on - strand at 78.027 kb on + strand, within H281DRAFT_05498 at 78.087 kb on - strand, within H281DRAFT_05498 at 78.190 kb on - strand, within H281DRAFT_05498 at 78.202 kb on + strand, within H281DRAFT_05498 at 78.264 kb on + strand, within H281DRAFT_05498 at 78.264 kb on + strand, within H281DRAFT_05498 at 78.264 kb on + strand, within H281DRAFT_05498 at 78.265 kb on - strand, within H281DRAFT_05498 at 78.265 kb on - strand, within H281DRAFT_05498 at 78.379 kb on + strand, within H281DRAFT_05498 at 78.429 kb on + strand, within H281DRAFT_05498 at 78.430 kb on - strand, within H281DRAFT_05498 at 78.493 kb on + strand at 78.494 kb on - strand at 78.495 kb on + strand at 78.495 kb on + strand at 78.495 kb on + strand at 78.495 kb on + strand at 78.495 kb on + strand at 78.942 kb on - strand, within H281DRAFT_05499 at 79.001 kb on - strand, within H281DRAFT_05499 at 79.001 kb on - strand, within H281DRAFT_05499 at 79.382 kb on + strand at 79.434 kb on - strand at 79.509 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C) remove 76,627 - H281DRAFT_05496 0.78 +0.3 76,627 - H281DRAFT_05496 0.78 -1.0 76,646 + H281DRAFT_05496 0.80 +0.1 76,646 + H281DRAFT_05496 0.80 +0.4 76,646 + H281DRAFT_05496 0.80 +3.0 76,647 - H281DRAFT_05496 0.80 -0.3 76,647 - H281DRAFT_05496 0.80 -0.3 76,650 + H281DRAFT_05496 0.81 -1.9 76,660 + H281DRAFT_05496 0.81 +2.2 76,936 - +0.5 76,955 - H281DRAFT_05497 0.10 -0.7 76,995 + H281DRAFT_05497 0.15 +0.0 77,070 + H281DRAFT_05497 0.26 -0.0 77,070 + H281DRAFT_05497 0.26 -0.8 77,071 - H281DRAFT_05497 0.26 +0.4 77,138 - H281DRAFT_05497 0.35 +0.3 77,575 - +0.2 78,027 + H281DRAFT_05498 0.45 +0.3 78,087 - H281DRAFT_05498 0.51 -0.1 78,190 - H281DRAFT_05498 0.62 -0.1 78,202 + H281DRAFT_05498 0.64 -0.0 78,264 + H281DRAFT_05498 0.70 -0.3 78,264 + H281DRAFT_05498 0.70 +0.1 78,264 + H281DRAFT_05498 0.70 -0.4 78,265 - H281DRAFT_05498 0.70 -0.1 78,265 - H281DRAFT_05498 0.70 -0.4 78,379 + H281DRAFT_05498 0.83 +0.4 78,429 + H281DRAFT_05498 0.88 -0.6 78,430 - H281DRAFT_05498 0.88 +0.5 78,493 + -0.8 78,494 - -0.3 78,495 + -0.4 78,495 + -0.5 78,495 + -0.1 78,495 + +0.5 78,495 + -0.8 78,942 - H281DRAFT_05499 0.47 +0.6 79,001 - H281DRAFT_05499 0.55 +0.3 79,001 - H281DRAFT_05499 0.55 -0.1 79,382 + +0.6 79,434 - -0.4 79,509 - -0.7
Or see this region's nucleotide sequence