Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05498

Experiment: 4-Methyl-2-oxopentanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05496 and H281DRAFT_05497 are separated by 31 nucleotidesH281DRAFT_05497 and H281DRAFT_05498 overlap by 10 nucleotidesH281DRAFT_05498 and H281DRAFT_05499 are separated by 16 nucleotidesH281DRAFT_05499 and H281DRAFT_05500 are separated by 10 nucleotides H281DRAFT_05496: H281DRAFT_05496 - Acetoin utilization deacetylase AcuC, at 75,824 to 76,849 _05496 H281DRAFT_05497: H281DRAFT_05497 - 3-oxoacyl-[acyl-carrier protein] reductase, at 76,881 to 77,621 _05497 H281DRAFT_05498: H281DRAFT_05498 - branched chain amino acid aminotransferase apoenzyme (EC 2.6.1.42), at 77,612 to 78,538 _05498 H281DRAFT_05499: H281DRAFT_05499 - putative spermidine/putrescine transport system permease protein, at 78,555 to 79,370 _05499 H281DRAFT_05500: H281DRAFT_05500 - putative spermidine/putrescine transport system permease protein, at 79,381 to 80,736 _05500 Position (kb) 77 78 79Strain fitness (log2 ratio) -2 -1 0 1 2 3at 76.627 kb on - strand, within H281DRAFT_05496at 76.627 kb on - strand, within H281DRAFT_05496at 76.646 kb on + strand, within H281DRAFT_05496at 76.646 kb on + strand, within H281DRAFT_05496at 76.646 kb on + strand, within H281DRAFT_05496at 76.647 kb on - strand, within H281DRAFT_05496at 76.647 kb on - strand, within H281DRAFT_05496at 76.650 kb on + strand, within H281DRAFT_05496at 76.660 kb on + strand, within H281DRAFT_05496at 76.936 kb on - strandat 76.955 kb on - strand, within H281DRAFT_05497at 76.995 kb on + strand, within H281DRAFT_05497at 77.070 kb on + strand, within H281DRAFT_05497at 77.070 kb on + strand, within H281DRAFT_05497at 77.071 kb on - strand, within H281DRAFT_05497at 77.138 kb on - strand, within H281DRAFT_05497at 77.575 kb on - strandat 78.027 kb on + strand, within H281DRAFT_05498at 78.087 kb on - strand, within H281DRAFT_05498at 78.190 kb on - strand, within H281DRAFT_05498at 78.202 kb on + strand, within H281DRAFT_05498at 78.264 kb on + strand, within H281DRAFT_05498at 78.264 kb on + strand, within H281DRAFT_05498at 78.264 kb on + strand, within H281DRAFT_05498at 78.265 kb on - strand, within H281DRAFT_05498at 78.265 kb on - strand, within H281DRAFT_05498at 78.379 kb on + strand, within H281DRAFT_05498at 78.429 kb on + strand, within H281DRAFT_05498at 78.430 kb on - strand, within H281DRAFT_05498at 78.493 kb on + strandat 78.494 kb on - strandat 78.495 kb on + strandat 78.495 kb on + strandat 78.495 kb on + strandat 78.495 kb on + strandat 78.495 kb on + strandat 78.942 kb on - strand, within H281DRAFT_05499at 79.001 kb on - strand, within H281DRAFT_05499at 79.001 kb on - strand, within H281DRAFT_05499at 79.382 kb on + strandat 79.434 kb on - strandat 79.509 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C)
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76,627 - H281DRAFT_05496 0.78 +0.3
76,627 - H281DRAFT_05496 0.78 -1.0
76,646 + H281DRAFT_05496 0.80 +0.1
76,646 + H281DRAFT_05496 0.80 +0.4
76,646 + H281DRAFT_05496 0.80 +3.0
76,647 - H281DRAFT_05496 0.80 -0.3
76,647 - H281DRAFT_05496 0.80 -0.3
76,650 + H281DRAFT_05496 0.81 -1.9
76,660 + H281DRAFT_05496 0.81 +2.2
76,936 - +0.5
76,955 - H281DRAFT_05497 0.10 -0.7
76,995 + H281DRAFT_05497 0.15 +0.0
77,070 + H281DRAFT_05497 0.26 -0.0
77,070 + H281DRAFT_05497 0.26 -0.8
77,071 - H281DRAFT_05497 0.26 +0.4
77,138 - H281DRAFT_05497 0.35 +0.3
77,575 - +0.2
78,027 + H281DRAFT_05498 0.45 +0.3
78,087 - H281DRAFT_05498 0.51 -0.1
78,190 - H281DRAFT_05498 0.62 -0.1
78,202 + H281DRAFT_05498 0.64 -0.0
78,264 + H281DRAFT_05498 0.70 -0.3
78,264 + H281DRAFT_05498 0.70 +0.1
78,264 + H281DRAFT_05498 0.70 -0.4
78,265 - H281DRAFT_05498 0.70 -0.1
78,265 - H281DRAFT_05498 0.70 -0.4
78,379 + H281DRAFT_05498 0.83 +0.4
78,429 + H281DRAFT_05498 0.88 -0.6
78,430 - H281DRAFT_05498 0.88 +0.5
78,493 + -0.8
78,494 - -0.3
78,495 + -0.4
78,495 + -0.5
78,495 + -0.1
78,495 + +0.5
78,495 + -0.8
78,942 - H281DRAFT_05499 0.47 +0.6
79,001 - H281DRAFT_05499 0.55 +0.3
79,001 - H281DRAFT_05499 0.55 -0.1
79,382 + +0.6
79,434 - -0.4
79,509 - -0.7

Or see this region's nucleotide sequence