Experiment: 4-Methyl-2-oxopentanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05012 and H281DRAFT_05013 are separated by 125 nucleotides H281DRAFT_05013 and H281DRAFT_05014 overlap by 17 nucleotides H281DRAFT_05014 and H281DRAFT_05015 are separated by 100 nucleotides H281DRAFT_05015 and H281DRAFT_05016 are separated by 132 nucleotides
H281DRAFT_05012: H281DRAFT_05012 - hypothetical protein, at 197,146 to 198,138
_05012
H281DRAFT_05013: H281DRAFT_05013 - type III secretion protein D, at 198,264 to 199,556
_05013
H281DRAFT_05014: H281DRAFT_05014 - hypothetical protein, at 199,540 to 199,782
_05014
H281DRAFT_05015: H281DRAFT_05015 - hypothetical protein, at 199,883 to 200,137
_05015
H281DRAFT_05016: H281DRAFT_05016 - Tir chaperone protein (CesT) family protein, at 200,270 to 200,719
_05016
Position (kb) 198
199
200 Strain fitness (log2 ratio) -1
0
1 at 197.267 kb on - strand, within H281DRAFT_05012 at 197.668 kb on - strand, within H281DRAFT_05012 at 198.290 kb on + strand at 198.418 kb on + strand, within H281DRAFT_05013 at 198.418 kb on + strand, within H281DRAFT_05013 at 198.460 kb on + strand, within H281DRAFT_05013 at 198.583 kb on + strand, within H281DRAFT_05013 at 199.543 kb on + strand at 199.544 kb on - strand at 199.717 kb on + strand, within H281DRAFT_05014 at 199.717 kb on + strand, within H281DRAFT_05014 at 199.717 kb on + strand, within H281DRAFT_05014 at 200.307 kb on + strand at 200.417 kb on + strand, within H281DRAFT_05016 at 200.417 kb on + strand, within H281DRAFT_05016 at 200.417 kb on + strand, within H281DRAFT_05016 at 200.418 kb on - strand, within H281DRAFT_05016 at 200.420 kb on - strand, within H281DRAFT_05016 at 200.501 kb on + strand, within H281DRAFT_05016
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C) remove 197,267 - H281DRAFT_05012 0.12 +0.1 197,668 - H281DRAFT_05012 0.53 -0.1 198,290 + -0.0 198,418 + H281DRAFT_05013 0.12 -0.4 198,418 + H281DRAFT_05013 0.12 -0.9 198,460 + H281DRAFT_05013 0.15 -0.4 198,583 + H281DRAFT_05013 0.25 -0.4 199,543 + -0.1 199,544 - -0.8 199,717 + H281DRAFT_05014 0.73 +0.1 199,717 + H281DRAFT_05014 0.73 -0.0 199,717 + H281DRAFT_05014 0.73 -0.1 200,307 + +0.4 200,417 + H281DRAFT_05016 0.33 +1.5 200,417 + H281DRAFT_05016 0.33 -0.2 200,417 + H281DRAFT_05016 0.33 -0.1 200,418 - H281DRAFT_05016 0.33 +0.2 200,420 - H281DRAFT_05016 0.33 -1.4 200,501 + H281DRAFT_05016 0.51 -0.4
Or see this region's nucleotide sequence