Experiment: 4-Methyl-2-oxopentanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04763 and H281DRAFT_04764 overlap by 4 nucleotides H281DRAFT_04764 and H281DRAFT_04765 are separated by 62 nucleotides
H281DRAFT_04763: H281DRAFT_04763 - hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4), at 178,458 to 179,441
_04763
H281DRAFT_04764: H281DRAFT_04764 - Crotonobetainyl-CoA:carnitine CoA-transferase CaiB, at 179,438 to 180,676
_04764
H281DRAFT_04765: H281DRAFT_04765 - MFS transporter, putative metabolite:H+ symporter, at 180,739 to 182,220
_04765
Position (kb) 179
180
181 Strain fitness (log2 ratio) -1
0
1 at 178.467 kb on - strand at 178.573 kb on - strand, within H281DRAFT_04763 at 179.268 kb on + strand, within H281DRAFT_04763 at 179.353 kb on - strand at 179.410 kb on + strand at 179.533 kb on + strand at 179.533 kb on + strand at 179.534 kb on - strand at 179.921 kb on + strand, within H281DRAFT_04764 at 179.922 kb on - strand, within H281DRAFT_04764 at 180.523 kb on + strand, within H281DRAFT_04764 at 180.594 kb on + strand at 180.595 kb on - strand at 180.595 kb on - strand at 180.763 kb on + strand at 180.763 kb on + strand at 180.953 kb on - strand, within H281DRAFT_04765 at 180.974 kb on - strand, within H281DRAFT_04765 at 181.214 kb on + strand, within H281DRAFT_04765 at 181.215 kb on - strand, within H281DRAFT_04765 at 181.270 kb on + strand, within H281DRAFT_04765 at 181.270 kb on + strand, within H281DRAFT_04765 at 181.271 kb on - strand, within H281DRAFT_04765 at 181.271 kb on - strand, within H281DRAFT_04765 at 181.271 kb on - strand at 181.273 kb on - strand, within H281DRAFT_04765 at 181.273 kb on - strand, within H281DRAFT_04765 at 181.370 kb on - strand, within H281DRAFT_04765
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C) remove 178,467 - +0.1 178,573 - H281DRAFT_04763 0.12 +0.1 179,268 + H281DRAFT_04763 0.82 +0.4 179,353 - +0.2 179,410 + +0.3 179,533 + +0.1 179,533 + +0.3 179,534 - +0.8 179,921 + H281DRAFT_04764 0.39 +0.6 179,922 - H281DRAFT_04764 0.39 +0.4 180,523 + H281DRAFT_04764 0.88 +0.2 180,594 + +0.6 180,595 - +0.0 180,595 - -0.5 180,763 + +1.1 180,763 + +0.5 180,953 - H281DRAFT_04765 0.14 +0.9 180,974 - H281DRAFT_04765 0.16 -0.7 181,214 + H281DRAFT_04765 0.32 +0.0 181,215 - H281DRAFT_04765 0.32 +0.6 181,270 + H281DRAFT_04765 0.36 +0.4 181,270 + H281DRAFT_04765 0.36 +0.4 181,271 - H281DRAFT_04765 0.36 +0.4 181,271 - H281DRAFT_04765 0.36 -0.3 181,271 - +0.4 181,273 - H281DRAFT_04765 0.36 -0.2 181,273 - H281DRAFT_04765 0.36 +0.2 181,370 - H281DRAFT_04765 0.43 -0.3
Or see this region's nucleotide sequence