Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04627

Experiment: 4-Methyl-2-oxopentanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04626 and H281DRAFT_04627 are separated by 132 nucleotidesH281DRAFT_04627 and H281DRAFT_04628 are separated by 8 nucleotidesH281DRAFT_04628 and H281DRAFT_04629 are separated by 124 nucleotides H281DRAFT_04626: H281DRAFT_04626 - acetyl-CoA acyltransferase, at 22,818 to 24,017 _04626 H281DRAFT_04627: H281DRAFT_04627 - Enoyl-CoA hydratase, at 24,150 to 24,920 _04627 H281DRAFT_04628: H281DRAFT_04628 - FdhD protein, at 24,929 to 25,768 _04628 H281DRAFT_04629: H281DRAFT_04629 - conserved hypothetical protein, at 25,893 to 26,369 _04629 Position (kb) 24 25Strain fitness (log2 ratio) -1 0 1 2at 23.237 kb on + strand, within H281DRAFT_04626at 23.238 kb on - strand, within H281DRAFT_04626at 23.238 kb on - strand, within H281DRAFT_04626at 23.413 kb on - strand, within H281DRAFT_04626at 23.505 kb on - strand, within H281DRAFT_04626at 23.946 kb on + strandat 23.946 kb on + strandat 23.946 kb on + strandat 23.946 kb on + strandat 23.947 kb on - strandat 23.947 kb on - strandat 23.952 kb on + strandat 23.953 kb on - strandat 24.037 kb on - strandat 24.501 kb on + strand, within H281DRAFT_04627at 24.501 kb on + strand, within H281DRAFT_04627at 24.502 kb on - strand, within H281DRAFT_04627at 24.502 kb on - strand, within H281DRAFT_04627at 24.502 kb on - strand, within H281DRAFT_04627at 24.958 kb on - strandat 24.966 kb on + strandat 24.966 kb on + strandat 24.967 kb on - strandat 24.967 kb on - strandat 24.967 kb on - strandat 25.218 kb on - strand, within H281DRAFT_04628at 25.218 kb on - strand, within H281DRAFT_04628at 25.785 kb on + strandat 25.786 kb on - strandat 25.786 kb on - strandat 25.786 kb on - strandat 25.786 kb on - strandat 25.786 kb on - strandat 25.830 kb on + strandat 25.831 kb on - strandat 25.831 kb on - strandat 25.831 kb on - strandat 25.831 kb on - strandat 25.838 kb on + strandat 25.838 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C)
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23,237 + H281DRAFT_04626 0.35 -0.6
23,238 - H281DRAFT_04626 0.35 -0.4
23,238 - H281DRAFT_04626 0.35 +0.5
23,413 - H281DRAFT_04626 0.50 +0.2
23,505 - H281DRAFT_04626 0.57 -0.1
23,946 + -1.0
23,946 + +0.1
23,946 + -0.4
23,946 + +0.3
23,947 - -0.0
23,947 - +0.6
23,952 + +0.7
23,953 - +0.2
24,037 - +0.5
24,501 + H281DRAFT_04627 0.46 +0.6
24,501 + H281DRAFT_04627 0.46 -0.2
24,502 - H281DRAFT_04627 0.46 -1.2
24,502 - H281DRAFT_04627 0.46 -1.5
24,502 - H281DRAFT_04627 0.46 -0.2
24,958 - -0.6
24,966 + -0.4
24,966 + +0.1
24,967 - +0.3
24,967 - -0.7
24,967 - +1.3
25,218 - H281DRAFT_04628 0.34 -0.3
25,218 - H281DRAFT_04628 0.34 -0.3
25,785 + -0.2
25,786 - +0.4
25,786 - +1.1
25,786 - +1.6
25,786 - +0.3
25,786 - -0.2
25,830 + +0.6
25,831 - -0.2
25,831 - +1.9
25,831 - -0.5
25,831 - -0.2
25,838 + -0.7
25,838 + +0.0

Or see this region's nucleotide sequence