Experiment: 4-Methyl-2-oxopentanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04450 and H281DRAFT_04451 overlap by 59 nucleotides H281DRAFT_04451 and H281DRAFT_04452 overlap by 8 nucleotides H281DRAFT_04452 and H281DRAFT_04453 overlap by 4 nucleotides H281DRAFT_04453 and H281DRAFT_04454 overlap by 4 nucleotides
H281DRAFT_04450: H281DRAFT_04450 - acyl-CoA thioester hydrolase, at 171,341 to 171,796
_04450
H281DRAFT_04451: H281DRAFT_04451 - amino acid/amide ABC transporter membrane protein 1, HAAT family, at 171,738 to 172,739
_04451
H281DRAFT_04452: H281DRAFT_04452 - amino acid/amide ABC transporter membrane protein 2, HAAT family (TC 3.A.1.4.-), at 172,732 to 174,048
_04452
H281DRAFT_04453: H281DRAFT_04453 - amino acid/amide ABC transporter ATP-binding protein 1, HAAT family, at 174,045 to 174,797
_04453
H281DRAFT_04454: H281DRAFT_04454 - amino acid/amide ABC transporter ATP-binding protein 2, HAAT family, at 174,794 to 175,507
_04454
Position (kb) 172
173
174
175 Strain fitness (log2 ratio) -2
-1
0
1 at 171.927 kb on + strand, within H281DRAFT_04451 at 171.927 kb on + strand, within H281DRAFT_04451 at 171.927 kb on + strand, within H281DRAFT_04451 at 172.105 kb on - strand, within H281DRAFT_04451 at 172.197 kb on + strand, within H281DRAFT_04451 at 172.493 kb on - strand, within H281DRAFT_04451 at 172.598 kb on + strand, within H281DRAFT_04451 at 172.598 kb on + strand, within H281DRAFT_04451 at 173.219 kb on + strand, within H281DRAFT_04452 at 173.404 kb on + strand, within H281DRAFT_04452 at 173.405 kb on - strand, within H281DRAFT_04452 at 173.651 kb on - strand, within H281DRAFT_04452 at 173.721 kb on + strand, within H281DRAFT_04452 at 173.768 kb on - strand, within H281DRAFT_04452 at 173.834 kb on - strand, within H281DRAFT_04452 at 174.333 kb on + strand, within H281DRAFT_04453 at 174.492 kb on + strand, within H281DRAFT_04453 at 174.493 kb on - strand, within H281DRAFT_04453 at 174.493 kb on - strand, within H281DRAFT_04453 at 174.523 kb on + strand, within H281DRAFT_04453 at 174.546 kb on - strand, within H281DRAFT_04453 at 174.771 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C) remove 171,927 + H281DRAFT_04451 0.19 +0.7 171,927 + H281DRAFT_04451 0.19 -0.9 171,927 + H281DRAFT_04451 0.19 +0.1 172,105 - H281DRAFT_04451 0.37 -0.5 172,197 + H281DRAFT_04451 0.46 -0.5 172,493 - H281DRAFT_04451 0.75 -0.3 172,598 + H281DRAFT_04451 0.86 -0.0 172,598 + H281DRAFT_04451 0.86 +0.3 173,219 + H281DRAFT_04452 0.37 +0.1 173,404 + H281DRAFT_04452 0.51 -2.4 173,405 - H281DRAFT_04452 0.51 -0.8 173,651 - H281DRAFT_04452 0.70 -0.7 173,721 + H281DRAFT_04452 0.75 -1.0 173,768 - H281DRAFT_04452 0.79 +0.1 173,834 - H281DRAFT_04452 0.84 -1.7 174,333 + H281DRAFT_04453 0.38 -0.6 174,492 + H281DRAFT_04453 0.59 -0.0 174,493 - H281DRAFT_04453 0.59 +0.1 174,493 - H281DRAFT_04453 0.59 -0.1 174,523 + H281DRAFT_04453 0.63 -0.3 174,546 - H281DRAFT_04453 0.67 -0.8 174,771 + +0.1
Or see this region's nucleotide sequence