Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04452

Experiment: 4-Methyl-2-oxopentanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04450 and H281DRAFT_04451 overlap by 59 nucleotidesH281DRAFT_04451 and H281DRAFT_04452 overlap by 8 nucleotidesH281DRAFT_04452 and H281DRAFT_04453 overlap by 4 nucleotidesH281DRAFT_04453 and H281DRAFT_04454 overlap by 4 nucleotides H281DRAFT_04450: H281DRAFT_04450 - acyl-CoA thioester hydrolase, at 171,341 to 171,796 _04450 H281DRAFT_04451: H281DRAFT_04451 - amino acid/amide ABC transporter membrane protein 1, HAAT family, at 171,738 to 172,739 _04451 H281DRAFT_04452: H281DRAFT_04452 - amino acid/amide ABC transporter membrane protein 2, HAAT family (TC 3.A.1.4.-), at 172,732 to 174,048 _04452 H281DRAFT_04453: H281DRAFT_04453 - amino acid/amide ABC transporter ATP-binding protein 1, HAAT family, at 174,045 to 174,797 _04453 H281DRAFT_04454: H281DRAFT_04454 - amino acid/amide ABC transporter ATP-binding protein 2, HAAT family, at 174,794 to 175,507 _04454 Position (kb) 172 173 174 175Strain fitness (log2 ratio) -2 -1 0 1at 171.927 kb on + strand, within H281DRAFT_04451at 171.927 kb on + strand, within H281DRAFT_04451at 171.927 kb on + strand, within H281DRAFT_04451at 172.105 kb on - strand, within H281DRAFT_04451at 172.197 kb on + strand, within H281DRAFT_04451at 172.493 kb on - strand, within H281DRAFT_04451at 172.598 kb on + strand, within H281DRAFT_04451at 172.598 kb on + strand, within H281DRAFT_04451at 173.219 kb on + strand, within H281DRAFT_04452at 173.404 kb on + strand, within H281DRAFT_04452at 173.405 kb on - strand, within H281DRAFT_04452at 173.651 kb on - strand, within H281DRAFT_04452at 173.721 kb on + strand, within H281DRAFT_04452at 173.768 kb on - strand, within H281DRAFT_04452at 173.834 kb on - strand, within H281DRAFT_04452at 174.333 kb on + strand, within H281DRAFT_04453at 174.492 kb on + strand, within H281DRAFT_04453at 174.493 kb on - strand, within H281DRAFT_04453at 174.493 kb on - strand, within H281DRAFT_04453at 174.523 kb on + strand, within H281DRAFT_04453at 174.546 kb on - strand, within H281DRAFT_04453at 174.771 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C)
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171,927 + H281DRAFT_04451 0.19 +0.7
171,927 + H281DRAFT_04451 0.19 -0.9
171,927 + H281DRAFT_04451 0.19 +0.1
172,105 - H281DRAFT_04451 0.37 -0.5
172,197 + H281DRAFT_04451 0.46 -0.5
172,493 - H281DRAFT_04451 0.75 -0.3
172,598 + H281DRAFT_04451 0.86 -0.0
172,598 + H281DRAFT_04451 0.86 +0.3
173,219 + H281DRAFT_04452 0.37 +0.1
173,404 + H281DRAFT_04452 0.51 -2.4
173,405 - H281DRAFT_04452 0.51 -0.8
173,651 - H281DRAFT_04452 0.70 -0.7
173,721 + H281DRAFT_04452 0.75 -1.0
173,768 - H281DRAFT_04452 0.79 +0.1
173,834 - H281DRAFT_04452 0.84 -1.7
174,333 + H281DRAFT_04453 0.38 -0.6
174,492 + H281DRAFT_04453 0.59 -0.0
174,493 - H281DRAFT_04453 0.59 +0.1
174,493 - H281DRAFT_04453 0.59 -0.1
174,523 + H281DRAFT_04453 0.63 -0.3
174,546 - H281DRAFT_04453 0.67 -0.8
174,771 + +0.1

Or see this region's nucleotide sequence