Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04054

Experiment: 4-Methyl-2-oxopentanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04052 and H281DRAFT_04053 are separated by 2 nucleotidesH281DRAFT_04053 and H281DRAFT_04054 are separated by 166 nucleotidesH281DRAFT_04054 and H281DRAFT_04055 are separated by 140 nucleotides H281DRAFT_04052: H281DRAFT_04052 - Predicted arabinose efflux permease, MFS family, at 153,513 to 154,763 _04052 H281DRAFT_04053: H281DRAFT_04053 - ribosomal small subunit pseudouridine synthase A (EC 5.4.99.-), at 154,766 to 155,566 _04053 H281DRAFT_04054: H281DRAFT_04054 - hypothetical protein, at 155,733 to 155,921 _04054 H281DRAFT_04055: H281DRAFT_04055 - Nucleoside-diphosphate-sugar epimerase, at 156,062 to 157,129 _04055 Position (kb) 155 156Strain fitness (log2 ratio) -1 0 1at 154.841 kb on + strandat 154.841 kb on + strandat 155.045 kb on + strand, within H281DRAFT_04053at 155.258 kb on + strand, within H281DRAFT_04053at 155.258 kb on + strand, within H281DRAFT_04053at 155.258 kb on + strand, within H281DRAFT_04053at 155.259 kb on - strand, within H281DRAFT_04053at 155.259 kb on - strand, within H281DRAFT_04053at 155.323 kb on - strand, within H281DRAFT_04053at 155.411 kb on + strand, within H281DRAFT_04053at 155.600 kb on + strandat 155.601 kb on - strandat 155.691 kb on + strandat 155.691 kb on + strandat 155.692 kb on - strandat 155.711 kb on - strandat 155.763 kb on + strand, within H281DRAFT_04054at 155.841 kb on + strand, within H281DRAFT_04054at 155.841 kb on + strand, within H281DRAFT_04054at 155.842 kb on - strand, within H281DRAFT_04054at 155.939 kb on + strandat 155.939 kb on + strandat 155.940 kb on - strandat 155.940 kb on - strandat 156.033 kb on + strandat 156.034 kb on - strandat 156.034 kb on - strandat 156.046 kb on + strandat 156.046 kb on + strandat 156.046 kb on + strandat 156.047 kb on - strandat 156.140 kb on + strandat 156.146 kb on + strandat 156.146 kb on + strandat 156.147 kb on - strandat 156.292 kb on - strand, within H281DRAFT_04055at 156.292 kb on - strand, within H281DRAFT_04055at 156.292 kb on - strand, within H281DRAFT_04055at 156.480 kb on + strand, within H281DRAFT_04055at 156.480 kb on + strand, within H281DRAFT_04055at 156.481 kb on - strand, within H281DRAFT_04055at 156.481 kb on - strand, within H281DRAFT_04055at 156.481 kb on - strand, within H281DRAFT_04055at 156.634 kb on - strand, within H281DRAFT_04055at 156.707 kb on + strand, within H281DRAFT_04055at 156.713 kb on - strand, within H281DRAFT_04055

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C)
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154,841 + -0.7
154,841 + -1.2
155,045 + H281DRAFT_04053 0.35 +0.2
155,258 + H281DRAFT_04053 0.61 +0.8
155,258 + H281DRAFT_04053 0.61 +0.4
155,258 + H281DRAFT_04053 0.61 +0.1
155,259 - H281DRAFT_04053 0.62 +0.2
155,259 - H281DRAFT_04053 0.62 +0.2
155,323 - H281DRAFT_04053 0.70 +0.1
155,411 + H281DRAFT_04053 0.81 -0.2
155,600 + +0.9
155,601 - +0.2
155,691 + +1.4
155,691 + -0.5
155,692 - -0.9
155,711 - +0.2
155,763 + H281DRAFT_04054 0.16 -0.0
155,841 + H281DRAFT_04054 0.57 -0.6
155,841 + H281DRAFT_04054 0.57 -0.5
155,842 - H281DRAFT_04054 0.58 +0.2
155,939 + -0.2
155,939 + +0.3
155,940 - -0.9
155,940 - +0.1
156,033 + -0.2
156,034 - +0.3
156,034 - +0.9
156,046 + +0.7
156,046 + +0.5
156,046 + -0.4
156,047 - -0.1
156,140 + -0.4
156,146 + -0.2
156,146 + +0.1
156,147 - -0.0
156,292 - H281DRAFT_04055 0.22 -1.1
156,292 - H281DRAFT_04055 0.22 -0.1
156,292 - H281DRAFT_04055 0.22 +0.1
156,480 + H281DRAFT_04055 0.39 +1.1
156,480 + H281DRAFT_04055 0.39 -0.3
156,481 - H281DRAFT_04055 0.39 -1.3
156,481 - H281DRAFT_04055 0.39 +0.5
156,481 - H281DRAFT_04055 0.39 -0.1
156,634 - H281DRAFT_04055 0.54 +0.1
156,707 + H281DRAFT_04055 0.60 +1.1
156,713 - H281DRAFT_04055 0.61 -0.2

Or see this region's nucleotide sequence