Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04051

Experiment: 4-Methyl-2-oxopentanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04050 and H281DRAFT_04051 overlap by 4 nucleotidesH281DRAFT_04051 and H281DRAFT_04052 are separated by 218 nucleotides H281DRAFT_04050: H281DRAFT_04050 - beta-aspartyl-peptidase (threonine type), at 151,364 to 152,359 _04050 H281DRAFT_04051: H281DRAFT_04051 - transcriptional regulator, RpiR family, at 152,356 to 153,294 _04051 H281DRAFT_04052: H281DRAFT_04052 - Predicted arabinose efflux permease, MFS family, at 153,513 to 154,763 _04052 Position (kb) 152 153 154Strain fitness (log2 ratio) -1 0 1 2at 151.575 kb on + strand, within H281DRAFT_04050at 152.634 kb on - strand, within H281DRAFT_04051at 152.748 kb on - strand, within H281DRAFT_04051at 152.859 kb on - strand, within H281DRAFT_04051at 153.254 kb on + strandat 153.264 kb on + strandat 153.288 kb on + strandat 153.288 kb on + strandat 153.289 kb on - strandat 153.398 kb on - strandat 153.432 kb on - strandat 153.965 kb on - strand, within H281DRAFT_04052at 153.965 kb on - strand, within H281DRAFT_04052at 154.030 kb on + strand, within H281DRAFT_04052at 154.030 kb on + strand, within H281DRAFT_04052at 154.031 kb on - strand, within H281DRAFT_04052at 154.111 kb on - strand, within H281DRAFT_04052at 154.122 kb on - strand, within H281DRAFT_04052at 154.235 kb on - strand, within H281DRAFT_04052

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C)
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151,575 + H281DRAFT_04050 0.21 -0.3
152,634 - H281DRAFT_04051 0.30 -1.0
152,748 - H281DRAFT_04051 0.42 +1.9
152,859 - H281DRAFT_04051 0.54 +0.1
153,254 + -0.2
153,264 + +1.0
153,288 + +1.0
153,288 + -0.5
153,289 - +0.7
153,398 - +0.3
153,432 - +0.1
153,965 - H281DRAFT_04052 0.36 -1.1
153,965 - H281DRAFT_04052 0.36 -0.1
154,030 + H281DRAFT_04052 0.41 -0.2
154,030 + H281DRAFT_04052 0.41 -1.6
154,031 - H281DRAFT_04052 0.41 -0.2
154,111 - H281DRAFT_04052 0.48 -0.1
154,122 - H281DRAFT_04052 0.49 +0.7
154,235 - H281DRAFT_04052 0.58 -0.2

Or see this region's nucleotide sequence