Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03803

Experiment: 4-Methyl-2-oxopentanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03802 and H281DRAFT_03803 are separated by 86 nucleotidesH281DRAFT_03803 and H281DRAFT_03804 overlap by 4 nucleotidesH281DRAFT_03804 and H281DRAFT_03805 are separated by 298 nucleotides H281DRAFT_03802: H281DRAFT_03802 - two-component system, OmpR family, sensor histidine kinase TctE, at 322,812 to 324,206 _03802 H281DRAFT_03803: H281DRAFT_03803 - alcohol dehydrogenase, at 324,293 to 325,456 _03803 H281DRAFT_03804: H281DRAFT_03804 - Quinol monooxygenase YgiN, at 325,453 to 325,761 _03804 H281DRAFT_03805: H281DRAFT_03805 - Taurine dioxygenase, alpha-ketoglutarate-dependent, at 326,060 to 327,064 _03805 Position (kb) 324 325 326Strain fitness (log2 ratio) -1 0 1at 323.559 kb on - strand, within H281DRAFT_03802at 324.155 kb on + strandat 324.292 kb on - strandat 324.628 kb on - strand, within H281DRAFT_03803at 324.628 kb on - strand, within H281DRAFT_03803at 324.839 kb on - strand, within H281DRAFT_03803at 324.839 kb on - strand, within H281DRAFT_03803at 324.841 kb on - strand, within H281DRAFT_03803at 325.007 kb on + strand, within H281DRAFT_03803at 325.222 kb on + strand, within H281DRAFT_03803at 325.415 kb on + strandat 325.415 kb on + strandat 325.584 kb on - strand, within H281DRAFT_03804at 325.640 kb on + strand, within H281DRAFT_03804at 325.727 kb on + strand, within H281DRAFT_03804at 325.728 kb on - strand, within H281DRAFT_03804at 325.748 kb on + strandat 325.748 kb on + strandat 325.765 kb on + strandat 325.765 kb on + strandat 325.765 kb on + strandat 325.830 kb on - strandat 325.835 kb on + strandat 325.867 kb on + strandat 325.889 kb on - strandat 325.938 kb on + strandat 325.939 kb on - strandat 325.939 kb on - strandat 326.060 kb on - strandat 326.060 kb on - strandat 326.349 kb on - strand, within H281DRAFT_03805at 326.349 kb on - strand, within H281DRAFT_03805at 326.392 kb on + strand, within H281DRAFT_03805at 326.406 kb on - strand, within H281DRAFT_03805

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C)
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323,559 - H281DRAFT_03802 0.54 -1.2
324,155 + -0.2
324,292 - -0.1
324,628 - H281DRAFT_03803 0.29 +0.6
324,628 - H281DRAFT_03803 0.29 +1.0
324,839 - H281DRAFT_03803 0.47 +0.8
324,839 - H281DRAFT_03803 0.47 +1.1
324,841 - H281DRAFT_03803 0.47 -0.0
325,007 + H281DRAFT_03803 0.61 +0.1
325,222 + H281DRAFT_03803 0.80 +0.2
325,415 + -0.3
325,415 + -1.0
325,584 - H281DRAFT_03804 0.42 +0.2
325,640 + H281DRAFT_03804 0.61 +0.5
325,727 + H281DRAFT_03804 0.89 +0.2
325,728 - H281DRAFT_03804 0.89 +0.3
325,748 + -0.7
325,748 + +0.3
325,765 + -0.7
325,765 + +0.3
325,765 + -1.1
325,830 - -0.0
325,835 + -0.3
325,867 + -0.2
325,889 - +0.8
325,938 + -0.6
325,939 - +0.2
325,939 - -0.4
326,060 - -0.5
326,060 - -0.5
326,349 - H281DRAFT_03805 0.29 +0.6
326,349 - H281DRAFT_03805 0.29 +0.4
326,392 + H281DRAFT_03805 0.33 -1.0
326,406 - H281DRAFT_03805 0.34 +0.0

Or see this region's nucleotide sequence