Experiment: 4-Methyl-2-oxopentanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03708 and H281DRAFT_03709 overlap by 4 nucleotides H281DRAFT_03709 and H281DRAFT_03710 are separated by 71 nucleotides
H281DRAFT_03708: H281DRAFT_03708 - hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4), at 222,184 to 223,170
_03708
H281DRAFT_03709: H281DRAFT_03709 - Crotonobetainyl-CoA:carnitine CoA-transferase CaiB, at 223,167 to 224,441
_03709
H281DRAFT_03710: H281DRAFT_03710 - Nitrate/nitrite transporter NarK, at 224,513 to 225,820
_03710
Position (kb) 223
224
225 Strain fitness (log2 ratio) -1
0
1 at 222.180 kb on + strand at 222.180 kb on + strand at 222.181 kb on - strand at 222.323 kb on + strand, within H281DRAFT_03708 at 222.374 kb on + strand, within H281DRAFT_03708 at 222.402 kb on + strand, within H281DRAFT_03708 at 222.851 kb on + strand, within H281DRAFT_03708 at 222.851 kb on + strand, within H281DRAFT_03708 at 223.016 kb on + strand, within H281DRAFT_03708 at 223.064 kb on - strand, within H281DRAFT_03708 at 223.248 kb on - strand at 223.566 kb on + strand, within H281DRAFT_03709 at 223.567 kb on - strand, within H281DRAFT_03709 at 223.620 kb on + strand, within H281DRAFT_03709 at 223.620 kb on + strand, within H281DRAFT_03709 at 223.620 kb on + strand, within H281DRAFT_03709 at 223.620 kb on + strand, within H281DRAFT_03709 at 223.620 kb on + strand, within H281DRAFT_03709 at 223.621 kb on - strand, within H281DRAFT_03709 at 223.621 kb on - strand, within H281DRAFT_03709 at 223.621 kb on - strand, within H281DRAFT_03709 at 223.621 kb on - strand, within H281DRAFT_03709 at 223.621 kb on - strand, within H281DRAFT_03709 at 223.621 kb on - strand, within H281DRAFT_03709 at 223.622 kb on + strand, within H281DRAFT_03709 at 223.622 kb on + strand, within H281DRAFT_03709 at 223.622 kb on + strand, within H281DRAFT_03709 at 223.870 kb on - strand, within H281DRAFT_03709 at 224.106 kb on + strand, within H281DRAFT_03709 at 224.222 kb on + strand, within H281DRAFT_03709 at 224.500 kb on + strand at 224.500 kb on + strand at 224.636 kb on + strand at 224.637 kb on - strand at 225.115 kb on - strand, within H281DRAFT_03710 at 225.115 kb on - strand, within H281DRAFT_03710
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C) remove 222,180 + -0.1 222,180 + -0.5 222,181 - +0.4 222,323 + H281DRAFT_03708 0.14 +0.5 222,374 + H281DRAFT_03708 0.19 -0.1 222,402 + H281DRAFT_03708 0.22 +0.5 222,851 + H281DRAFT_03708 0.68 +1.1 222,851 + H281DRAFT_03708 0.68 -1.3 223,016 + H281DRAFT_03708 0.84 +0.7 223,064 - H281DRAFT_03708 0.89 -0.4 223,248 - -0.4 223,566 + H281DRAFT_03709 0.31 -0.6 223,567 - H281DRAFT_03709 0.31 -0.6 223,620 + H281DRAFT_03709 0.36 +0.8 223,620 + H281DRAFT_03709 0.36 +0.7 223,620 + H281DRAFT_03709 0.36 -0.3 223,620 + H281DRAFT_03709 0.36 -0.8 223,620 + H281DRAFT_03709 0.36 +0.2 223,621 - H281DRAFT_03709 0.36 +0.3 223,621 - H281DRAFT_03709 0.36 +0.4 223,621 - H281DRAFT_03709 0.36 +0.2 223,621 - H281DRAFT_03709 0.36 +0.4 223,621 - H281DRAFT_03709 0.36 -0.4 223,621 - H281DRAFT_03709 0.36 +0.0 223,622 + H281DRAFT_03709 0.36 +0.7 223,622 + H281DRAFT_03709 0.36 -0.2 223,622 + H281DRAFT_03709 0.36 -1.0 223,870 - H281DRAFT_03709 0.55 +0.4 224,106 + H281DRAFT_03709 0.74 -0.6 224,222 + H281DRAFT_03709 0.83 -0.3 224,500 + -0.1 224,500 + -0.9 224,636 + -0.1 224,637 - +1.5 225,115 - H281DRAFT_03710 0.46 +0.1 225,115 - H281DRAFT_03710 0.46 +0.2
Or see this region's nucleotide sequence