Experiment: 4-Methyl-2-oxopentanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02654 and H281DRAFT_02655 are separated by 198 nucleotides H281DRAFT_02655 and H281DRAFT_02656 are separated by 157 nucleotides H281DRAFT_02656 and H281DRAFT_02657 are separated by 102 nucleotides H281DRAFT_02657 and H281DRAFT_02658 are separated by 28 nucleotides
H281DRAFT_02654: H281DRAFT_02654 - N-acetyl-gamma-glutamyl-phosphate reductase, at 235,147 to 236,076
_02654
H281DRAFT_02655: H281DRAFT_02655 - hypothetical protein, at 236,275 to 236,595
_02655
H281DRAFT_02656: H281DRAFT_02656 - Glyoxylase, beta-lactamase superfamily II, at 236,753 to 237,790
_02656
H281DRAFT_02657: H281DRAFT_02657 - cyanate lyase, at 237,893 to 238,363
_02657
H281DRAFT_02658: H281DRAFT_02658 - carbonic anhydrase, at 238,392 to 239,051
_02658
Position (kb) 236
237
238 Strain fitness (log2 ratio) -1
0
1 at 235.939 kb on - strand, within H281DRAFT_02654 at 235.961 kb on + strand at 236.064 kb on - strand at 236.074 kb on + strand at 236.164 kb on + strand at 236.338 kb on + strand, within H281DRAFT_02655 at 236.412 kb on + strand at 236.593 kb on + strand at 236.666 kb on + strand at 236.666 kb on + strand at 236.778 kb on + strand at 236.879 kb on - strand, within H281DRAFT_02656 at 236.905 kb on + strand, within H281DRAFT_02656 at 236.957 kb on - strand, within H281DRAFT_02656 at 237.016 kb on + strand, within H281DRAFT_02656 at 237.069 kb on + strand, within H281DRAFT_02656 at 237.069 kb on + strand, within H281DRAFT_02656 at 237.070 kb on - strand, within H281DRAFT_02656 at 237.075 kb on + strand, within H281DRAFT_02656 at 237.130 kb on - strand, within H281DRAFT_02656 at 237.388 kb on + strand, within H281DRAFT_02656 at 237.389 kb on - strand, within H281DRAFT_02656 at 237.484 kb on + strand, within H281DRAFT_02656 at 238.508 kb on - strand, within H281DRAFT_02658
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C) remove 235,939 - H281DRAFT_02654 0.85 -0.5 235,961 + +0.3 236,064 - +0.2 236,074 + +0.8 236,164 + -0.2 236,338 + H281DRAFT_02655 0.20 +0.6 236,412 + -1.4 236,593 + -0.0 236,666 + +0.3 236,666 + -0.3 236,778 + +0.1 236,879 - H281DRAFT_02656 0.12 +0.9 236,905 + H281DRAFT_02656 0.15 +0.7 236,957 - H281DRAFT_02656 0.20 +0.1 237,016 + H281DRAFT_02656 0.25 -1.3 237,069 + H281DRAFT_02656 0.30 +0.5 237,069 + H281DRAFT_02656 0.30 +0.1 237,070 - H281DRAFT_02656 0.31 +0.3 237,075 + H281DRAFT_02656 0.31 +1.3 237,130 - H281DRAFT_02656 0.36 +0.6 237,388 + H281DRAFT_02656 0.61 +0.4 237,389 - H281DRAFT_02656 0.61 +0.5 237,484 + H281DRAFT_02656 0.70 +1.0 238,508 - H281DRAFT_02658 0.18 -0.2
Or see this region's nucleotide sequence