Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02478

Experiment: 4-Methyl-2-oxopentanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02477 and H281DRAFT_02478 are separated by 79 nucleotidesH281DRAFT_02478 and H281DRAFT_02479 are separated by 125 nucleotides H281DRAFT_02477: H281DRAFT_02477 - glycine betaine/proline transport system substrate-binding protein, at 48,997 to 49,854 _02477 H281DRAFT_02478: H281DRAFT_02478 - formyltetrahydrofolate deformylase (EC 3.5.1.10), at 49,934 to 50,809 _02478 H281DRAFT_02479: H281DRAFT_02479 - transcriptional regulator, LysR family, at 50,935 to 51,849 _02479 Position (kb) 49 50 51Strain fitness (log2 ratio) -1 0 1at 49.062 kb on - strandat 49.852 kb on + strandat 49.852 kb on + strandat 49.865 kb on - strandat 49.936 kb on - strandat 49.936 kb on - strandat 49.967 kb on - strandat 50.520 kb on - strand, within H281DRAFT_02478at 50.703 kb on + strand, within H281DRAFT_02478at 50.703 kb on + strand, within H281DRAFT_02478at 50.704 kb on - strand, within H281DRAFT_02478at 50.704 kb on - strand, within H281DRAFT_02478at 50.932 kb on + strandat 50.932 kb on + strandat 50.932 kb on + strandat 50.936 kb on + strandat 50.936 kb on + strandat 50.986 kb on + strandat 51.024 kb on - strandat 51.524 kb on + strand, within H281DRAFT_02479at 51.525 kb on - strandat 51.734 kb on - strand, within H281DRAFT_02479

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C)
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49,062 - -0.3
49,852 + +0.6
49,852 + +0.1
49,865 - +1.2
49,936 - -0.7
49,936 - +0.3
49,967 - +0.8
50,520 - H281DRAFT_02478 0.67 +1.0
50,703 + H281DRAFT_02478 0.88 +0.1
50,703 + H281DRAFT_02478 0.88 -0.0
50,704 - H281DRAFT_02478 0.88 +0.9
50,704 - H281DRAFT_02478 0.88 +0.3
50,932 + -0.1
50,932 + -0.1
50,932 + -0.2
50,936 + +0.1
50,936 + +0.2
50,986 + -0.1
51,024 - -0.5
51,524 + H281DRAFT_02479 0.64 -0.4
51,525 - -0.8
51,734 - H281DRAFT_02479 0.87 +1.0

Or see this region's nucleotide sequence