Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02004

Experiment: 4-Methyl-2-oxopentanoic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_02001 and H281DRAFT_02002 are separated by 150 nucleotidesH281DRAFT_02002 and H281DRAFT_02003 overlap by 4 nucleotidesH281DRAFT_02003 and H281DRAFT_02004 are separated by 22 nucleotidesH281DRAFT_02004 and H281DRAFT_02005 are separated by 378 nucleotides H281DRAFT_02001: H281DRAFT_02001 - protein translocase subunit secB, at 118,871 to 119,341 _02001 H281DRAFT_02002: H281DRAFT_02002 - glutaredoxin 3, at 119,492 to 119,752 _02002 H281DRAFT_02003: H281DRAFT_02003 - Rhodanese-related sulfurtransferase, at 119,749 to 120,222 _02003 H281DRAFT_02004: H281DRAFT_02004 - phosphoglycerate mutase, at 120,245 to 121,057 _02004 H281DRAFT_02005: H281DRAFT_02005 - carboxyl-terminal processing protease, at 121,436 to 123,013 _02005 Position (kb) 120 121 122Strain fitness (log2 ratio) -3 -2 -1 0 1at 119.360 kb on + strandat 119.361 kb on - strandat 119.361 kb on - strandat 119.361 kb on - strandat 119.361 kb on - strandat 119.361 kb on - strandat 119.364 kb on + strandat 119.365 kb on - strandat 119.365 kb on - strandat 119.365 kb on - strandat 119.365 kb on - strandat 119.365 kb on - strandat 119.365 kb on - strandat 119.365 kb on - strandat 119.365 kb on - strandat 119.370 kb on + strandat 119.403 kb on + strandat 119.404 kb on - strandat 119.404 kb on - strandat 119.404 kb on - strandat 119.404 kb on - strandat 119.404 kb on - strandat 119.453 kb on - strandat 119.453 kb on - strandat 119.733 kb on + strandat 119.733 kb on + strandat 119.733 kb on + strandat 119.733 kb on + strandat 119.734 kb on - strandat 119.759 kb on - strandat 119.853 kb on + strand, within H281DRAFT_02003at 119.913 kb on + strand, within H281DRAFT_02003at 119.913 kb on + strand, within H281DRAFT_02003at 120.155 kb on + strand, within H281DRAFT_02003at 120.155 kb on + strand, within H281DRAFT_02003at 120.155 kb on + strand, within H281DRAFT_02003at 120.156 kb on - strand, within H281DRAFT_02003at 120.223 kb on + strandat 120.224 kb on - strandat 120.225 kb on + strandat 120.226 kb on - strandat 120.226 kb on - strandat 120.226 kb on - strandat 120.226 kb on - strandat 120.230 kb on + strandat 120.231 kb on - strandat 120.231 kb on - strandat 120.260 kb on + strandat 120.260 kb on + strandat 120.260 kb on + strandat 120.310 kb on + strandat 120.310 kb on + strandat 120.310 kb on + strandat 120.310 kb on + strandat 120.310 kb on + strandat 120.310 kb on + strandat 120.311 kb on - strandat 120.314 kb on + strandat 120.315 kb on - strandat 120.453 kb on - strand, within H281DRAFT_02004at 120.470 kb on + strand, within H281DRAFT_02004at 120.472 kb on + strand, within H281DRAFT_02004at 120.473 kb on - strand, within H281DRAFT_02004at 120.473 kb on - strand, within H281DRAFT_02004at 120.536 kb on + strand, within H281DRAFT_02004at 120.537 kb on - strand, within H281DRAFT_02004at 120.537 kb on - strand, within H281DRAFT_02004at 120.537 kb on - strand, within H281DRAFT_02004at 120.884 kb on + strand, within H281DRAFT_02004at 120.951 kb on - strand, within H281DRAFT_02004at 120.951 kb on - strand, within H281DRAFT_02004at 120.987 kb on - strandat 120.989 kb on + strandat 120.990 kb on - strandat 121.083 kb on + strandat 121.083 kb on + strandat 121.094 kb on + strandat 121.094 kb on + strandat 121.094 kb on + strandat 121.094 kb on + strandat 121.094 kb on + strandat 121.094 kb on + strandat 121.094 kb on + strandat 121.095 kb on - strandat 121.095 kb on - strandat 121.095 kb on - strandat 121.095 kb on - strandat 121.277 kb on + strandat 121.278 kb on - strandat 121.278 kb on - strandat 121.278 kb on - strandat 121.278 kb on - strandat 121.278 kb on - strandat 121.375 kb on + strandat 121.375 kb on + strandat 121.375 kb on + strandat 121.376 kb on - strandat 121.377 kb on + strandat 121.377 kb on + strandat 121.377 kb on + strandat 121.377 kb on + strandat 121.397 kb on + strandat 121.435 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C)
remove
119,360 + -0.6
119,361 - +0.2
119,361 - +0.4
119,361 - -0.1
119,361 - +0.2
119,361 - +0.0
119,364 + -1.4
119,365 - -0.3
119,365 - -0.6
119,365 - -0.2
119,365 - +0.2
119,365 - +0.2
119,365 - -0.3
119,365 - +0.0
119,365 - +0.9
119,370 + +0.2
119,403 + +0.1
119,404 - -0.6
119,404 - +0.8
119,404 - -0.2
119,404 - -0.0
119,404 - +0.2
119,453 - -0.3
119,453 - +0.1
119,733 + +0.1
119,733 + -0.0
119,733 + -0.1
119,733 + -0.5
119,734 - -0.3
119,759 - +0.8
119,853 + H281DRAFT_02003 0.22 +0.6
119,913 + H281DRAFT_02003 0.35 -0.6
119,913 + H281DRAFT_02003 0.35 +0.1
120,155 + H281DRAFT_02003 0.86 +1.0
120,155 + H281DRAFT_02003 0.86 +0.1
120,155 + H281DRAFT_02003 0.86 +0.9
120,156 - H281DRAFT_02003 0.86 -0.8
120,223 + +0.5
120,224 - -0.0
120,225 + +0.0
120,226 - -0.6
120,226 - +0.6
120,226 - +0.3
120,226 - +0.7
120,230 + -0.0
120,231 - +1.1
120,231 - -2.8
120,260 + +0.6
120,260 + -1.2
120,260 + +0.3
120,310 + +0.0
120,310 + +0.1
120,310 + -0.4
120,310 + -0.1
120,310 + +0.2
120,310 + +0.2
120,311 - -2.9
120,314 + -2.2
120,315 - -0.6
120,453 - H281DRAFT_02004 0.26 -2.7
120,470 + H281DRAFT_02004 0.28 -1.7
120,472 + H281DRAFT_02004 0.28 -2.3
120,473 - H281DRAFT_02004 0.28 -1.8
120,473 - H281DRAFT_02004 0.28 -2.1
120,536 + H281DRAFT_02004 0.36 -3.1
120,537 - H281DRAFT_02004 0.36 -3.1
120,537 - H281DRAFT_02004 0.36 -2.9
120,537 - H281DRAFT_02004 0.36 -1.5
120,884 + H281DRAFT_02004 0.79 -0.3
120,951 - H281DRAFT_02004 0.87 -1.3
120,951 - H281DRAFT_02004 0.87 -1.9
120,987 - -1.0
120,989 + -2.5
120,990 - -1.7
121,083 + -0.4
121,083 + -0.9
121,094 + +0.1
121,094 + -0.3
121,094 + -0.1
121,094 + -0.5
121,094 + +0.0
121,094 + +0.0
121,094 + +0.3
121,095 - +0.3
121,095 - +0.4
121,095 - -0.6
121,095 - +0.4
121,277 + -0.6
121,278 - +0.6
121,278 - +1.0
121,278 - -0.1
121,278 - +0.1
121,278 - +1.3
121,375 + -0.7
121,375 + +0.1
121,375 + +0.4
121,376 - +0.4
121,377 + +1.1
121,377 + +0.2
121,377 + -0.1
121,377 + -3.7
121,397 + +0.5
121,435 + +0.3

Or see this region's nucleotide sequence