Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01935

Experiment: 4-Methyl-2-oxopentanoic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_01933 and H281DRAFT_01934 are separated by 6 nucleotidesH281DRAFT_01934 and H281DRAFT_01935 are separated by 87 nucleotidesH281DRAFT_01935 and H281DRAFT_01936 overlap by 1 nucleotidesH281DRAFT_01936 and H281DRAFT_01937 are separated by 60 nucleotides H281DRAFT_01933: H281DRAFT_01933 - A/G-specific DNA-adenine glycosylase, at 49,821 to 50,969 _01933 H281DRAFT_01934: H281DRAFT_01934 - DNA-(apurinic or apyrimidinic site) lyase, at 50,976 to 51,806 _01934 H281DRAFT_01935: H281DRAFT_01935 - Tetratricopeptide repeat-containing protein, at 51,894 to 53,735 _01935 H281DRAFT_01936: H281DRAFT_01936 - outer membrane lipoprotein LolB, at 53,735 to 54,367 _01936 H281DRAFT_01937: H281DRAFT_01937 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, at 54,428 to 55,309 _01937 Position (kb) 51 52 53 54Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 50.907 kb on + strandat 51.076 kb on + strand, within H281DRAFT_01934at 51.076 kb on + strand, within H281DRAFT_01934at 51.077 kb on - strand, within H281DRAFT_01934at 51.086 kb on - strandat 51.202 kb on + strand, within H281DRAFT_01934at 51.207 kb on + strand, within H281DRAFT_01934at 51.208 kb on - strand, within H281DRAFT_01934at 51.275 kb on - strand, within H281DRAFT_01934at 51.278 kb on + strand, within H281DRAFT_01934at 51.278 kb on + strand, within H281DRAFT_01934at 51.278 kb on + strand, within H281DRAFT_01934at 51.279 kb on - strand, within H281DRAFT_01934at 51.279 kb on - strand, within H281DRAFT_01934at 51.279 kb on - strand, within H281DRAFT_01934at 51.279 kb on - strand, within H281DRAFT_01934at 51.279 kb on - strand, within H281DRAFT_01934at 51.279 kb on - strand, within H281DRAFT_01934at 51.279 kb on - strand, within H281DRAFT_01934at 51.632 kb on - strand, within H281DRAFT_01934at 51.677 kb on + strand, within H281DRAFT_01934at 51.677 kb on + strand, within H281DRAFT_01934at 51.678 kb on - strand, within H281DRAFT_01934at 51.719 kb on + strand, within H281DRAFT_01934at 51.757 kb on + strandat 51.757 kb on + strandat 51.757 kb on + strandat 51.758 kb on - strandat 51.758 kb on - strandat 51.758 kb on - strandat 51.758 kb on - strandat 51.810 kb on + strandat 51.810 kb on + strandat 51.810 kb on + strandat 51.810 kb on + strandat 51.811 kb on - strandat 51.811 kb on - strandat 51.811 kb on - strandat 51.811 kb on - strandat 51.811 kb on - strandat 51.811 kb on - strandat 51.846 kb on + strandat 51.846 kb on + strandat 51.851 kb on + strandat 51.863 kb on + strandat 51.863 kb on + strandat 51.864 kb on - strandat 52.184 kb on + strand, within H281DRAFT_01935at 52.329 kb on + strand, within H281DRAFT_01935at 52.782 kb on + strand, within H281DRAFT_01935at 52.920 kb on + strand, within H281DRAFT_01935at 52.920 kb on + strand, within H281DRAFT_01935at 52.933 kb on - strand, within H281DRAFT_01935at 52.980 kb on + strand, within H281DRAFT_01935at 52.980 kb on + strand, within H281DRAFT_01935at 52.980 kb on + strand, within H281DRAFT_01935at 52.980 kb on + strand, within H281DRAFT_01935at 52.982 kb on + strand, within H281DRAFT_01935at 52.982 kb on + strand, within H281DRAFT_01935at 52.982 kb on + strand, within H281DRAFT_01935at 52.982 kb on + strand, within H281DRAFT_01935at 52.982 kb on + strand, within H281DRAFT_01935at 52.982 kb on + strand, within H281DRAFT_01935at 52.982 kb on + strand, within H281DRAFT_01935at 52.982 kb on + strand, within H281DRAFT_01935at 52.987 kb on - strand, within H281DRAFT_01935at 53.041 kb on + strand, within H281DRAFT_01935at 53.070 kb on + strand, within H281DRAFT_01935at 53.070 kb on + strand, within H281DRAFT_01935at 53.070 kb on + strand, within H281DRAFT_01935at 53.070 kb on + strandat 53.071 kb on - strand, within H281DRAFT_01935at 53.071 kb on - strand, within H281DRAFT_01935at 53.391 kb on + strand, within H281DRAFT_01935at 53.392 kb on - strand, within H281DRAFT_01935at 53.534 kb on + strand, within H281DRAFT_01935at 53.535 kb on - strand, within H281DRAFT_01935at 53.568 kb on + strandat 53.569 kb on - strandat 53.740 kb on + strandat 53.740 kb on + strandat 53.740 kb on + strandat 53.811 kb on + strand, within H281DRAFT_01936at 53.924 kb on + strand, within H281DRAFT_01936at 54.269 kb on + strand, within H281DRAFT_01936at 54.354 kb on + strandat 54.365 kb on + strandat 54.365 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C)
remove
50,907 + -0.4
51,076 + H281DRAFT_01934 0.12 -0.3
51,076 + H281DRAFT_01934 0.12 -0.9
51,077 - H281DRAFT_01934 0.12 +0.7
51,086 - +0.2
51,202 + H281DRAFT_01934 0.27 +0.2
51,207 + H281DRAFT_01934 0.28 +0.1
51,208 - H281DRAFT_01934 0.28 -0.1
51,275 - H281DRAFT_01934 0.36 -0.2
51,278 + H281DRAFT_01934 0.36 -0.2
51,278 + H281DRAFT_01934 0.36 +0.4
51,278 + H281DRAFT_01934 0.36 -0.5
51,279 - H281DRAFT_01934 0.36 +0.7
51,279 - H281DRAFT_01934 0.36 +0.2
51,279 - H281DRAFT_01934 0.36 +1.8
51,279 - H281DRAFT_01934 0.36 +0.2
51,279 - H281DRAFT_01934 0.36 -0.2
51,279 - H281DRAFT_01934 0.36 +0.5
51,279 - H281DRAFT_01934 0.36 -0.4
51,632 - H281DRAFT_01934 0.79 -0.2
51,677 + H281DRAFT_01934 0.84 -0.8
51,677 + H281DRAFT_01934 0.84 -0.6
51,678 - H281DRAFT_01934 0.84 +0.3
51,719 + H281DRAFT_01934 0.89 +0.1
51,757 + +0.2
51,757 + +0.1
51,757 + +0.1
51,758 - +0.3
51,758 - +0.3
51,758 - +0.6
51,758 - +0.1
51,810 + +0.1
51,810 + +1.0
51,810 + -0.5
51,810 + +0.5
51,811 - +1.0
51,811 - +0.3
51,811 - +1.1
51,811 - +0.7
51,811 - +0.8
51,811 - -0.2
51,846 + +0.0
51,846 + +1.1
51,851 + +0.2
51,863 + +0.5
51,863 + +0.8
51,864 - +0.5
52,184 + H281DRAFT_01935 0.16 -0.7
52,329 + H281DRAFT_01935 0.24 -0.5
52,782 + H281DRAFT_01935 0.48 -1.5
52,920 + H281DRAFT_01935 0.56 -0.8
52,920 + H281DRAFT_01935 0.56 -3.8
52,933 - H281DRAFT_01935 0.56 +0.4
52,980 + H281DRAFT_01935 0.59 -3.0
52,980 + H281DRAFT_01935 0.59 +0.2
52,980 + H281DRAFT_01935 0.59 -0.6
52,980 + H281DRAFT_01935 0.59 -0.8
52,982 + H281DRAFT_01935 0.59 -0.9
52,982 + H281DRAFT_01935 0.59 -0.3
52,982 + H281DRAFT_01935 0.59 -1.9
52,982 + H281DRAFT_01935 0.59 -0.8
52,982 + H281DRAFT_01935 0.59 -1.5
52,982 + H281DRAFT_01935 0.59 -2.1
52,982 + H281DRAFT_01935 0.59 -2.7
52,982 + H281DRAFT_01935 0.59 -1.3
52,987 - H281DRAFT_01935 0.59 -0.8
53,041 + H281DRAFT_01935 0.62 -2.1
53,070 + H281DRAFT_01935 0.64 -0.2
53,070 + H281DRAFT_01935 0.64 -0.5
53,070 + H281DRAFT_01935 0.64 -0.5
53,070 + -0.8
53,071 - H281DRAFT_01935 0.64 -1.5
53,071 - H281DRAFT_01935 0.64 -1.5
53,391 + H281DRAFT_01935 0.81 -3.4
53,392 - H281DRAFT_01935 0.81 -0.8
53,534 + H281DRAFT_01935 0.89 -0.2
53,535 - H281DRAFT_01935 0.89 -0.2
53,568 + -0.5
53,569 - -1.7
53,740 + +0.7
53,740 + -0.1
53,740 + +1.0
53,811 + H281DRAFT_01936 0.12 -0.1
53,924 + H281DRAFT_01936 0.30 +0.1
54,269 + H281DRAFT_01936 0.84 -0.9
54,354 + +1.5
54,365 + -1.3
54,365 + +0.1

Or see this region's nucleotide sequence