Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01836

Experiment: 4-Methyl-2-oxopentanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01835 and H281DRAFT_01836 are separated by 103 nucleotidesH281DRAFT_01836 and H281DRAFT_01837 are separated by 311 nucleotidesH281DRAFT_01837 and H281DRAFT_01838 are separated by 285 nucleotides H281DRAFT_01835: H281DRAFT_01835 - DNA-binding transcriptional regulator, LysR family, at 742,711 to 743,616 _01835 H281DRAFT_01836: H281DRAFT_01836 - hypothetical protein, at 743,720 to 744,448 _01836 H281DRAFT_01837: H281DRAFT_01837 - hypothetical protein, at 744,760 to 745,008 _01837 H281DRAFT_01838: H281DRAFT_01838 - regulator RcnB of Ni and Co efflux, at 745,294 to 745,704 _01838 Position (kb) 743 744 745Strain fitness (log2 ratio) -1 0 1at 743.191 kb on + strand, within H281DRAFT_01835at 743.347 kb on - strand, within H281DRAFT_01835at 743.512 kb on + strand, within H281DRAFT_01835at 743.513 kb on - strand, within H281DRAFT_01835at 743.515 kb on + strand, within H281DRAFT_01835at 743.516 kb on - strand, within H281DRAFT_01835at 743.516 kb on - strand, within H281DRAFT_01835at 743.525 kb on - strand, within H281DRAFT_01835at 743.537 kb on + strandat 743.538 kb on - strandat 743.538 kb on - strandat 743.538 kb on - strandat 743.805 kb on - strand, within H281DRAFT_01836at 743.997 kb on + strand, within H281DRAFT_01836at 744.029 kb on + strand, within H281DRAFT_01836at 744.530 kb on + strandat 744.531 kb on - strandat 744.563 kb on + strandat 744.567 kb on + strandat 744.615 kb on - strandat 744.670 kb on + strandat 744.687 kb on + strandat 744.688 kb on - strandat 744.712 kb on + strandat 744.715 kb on + strandat 744.770 kb on + strandat 744.771 kb on - strandat 744.771 kb on - strandat 744.771 kb on - strandat 744.900 kb on + strand, within H281DRAFT_01837at 745.073 kb on + strandat 745.074 kb on - strandat 745.152 kb on + strandat 745.152 kb on + strandat 745.152 kb on + strandat 745.215 kb on + strandat 745.215 kb on + strandat 745.289 kb on - strandat 745.289 kb on - strandat 745.289 kb on - strandat 745.292 kb on + strandat 745.292 kb on + strandat 745.293 kb on - strandat 745.293 kb on - strandat 745.299 kb on + strandat 745.299 kb on + strandat 745.310 kb on + strandat 745.311 kb on - strandat 745.311 kb on - strandat 745.338 kb on + strand, within H281DRAFT_01838at 745.339 kb on - strand, within H281DRAFT_01838at 745.434 kb on + strand, within H281DRAFT_01838

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C)
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743,191 + H281DRAFT_01835 0.53 -0.3
743,347 - H281DRAFT_01835 0.70 -0.2
743,512 + H281DRAFT_01835 0.88 +0.4
743,513 - H281DRAFT_01835 0.89 -0.6
743,515 + H281DRAFT_01835 0.89 -0.0
743,516 - H281DRAFT_01835 0.89 -1.1
743,516 - H281DRAFT_01835 0.89 -0.3
743,525 - H281DRAFT_01835 0.90 -1.2
743,537 + -0.3
743,538 - -0.3
743,538 - +0.1
743,538 - -0.7
743,805 - H281DRAFT_01836 0.12 -1.4
743,997 + H281DRAFT_01836 0.38 +0.5
744,029 + H281DRAFT_01836 0.42 +0.4
744,530 + +0.6
744,531 - -0.2
744,563 + -0.3
744,567 + +0.5
744,615 - -0.1
744,670 + -0.3
744,687 + +1.4
744,688 - -0.1
744,712 + -0.3
744,715 + +0.4
744,770 + -0.0
744,771 - +0.0
744,771 - +0.4
744,771 - -0.1
744,900 + H281DRAFT_01837 0.56 +0.2
745,073 + -0.4
745,074 - -0.2
745,152 + -0.0
745,152 + -0.4
745,152 + +0.3
745,215 + -0.3
745,215 + +0.2
745,289 - -0.3
745,289 - -0.3
745,289 - +0.1
745,292 + -0.7
745,292 + -0.1
745,293 - +0.1
745,293 - -0.2
745,299 + +0.2
745,299 + -0.1
745,310 + -0.5
745,311 - +0.5
745,311 - +0.1
745,338 + H281DRAFT_01838 0.11 -0.3
745,339 - H281DRAFT_01838 0.11 -0.6
745,434 + H281DRAFT_01838 0.34 +0.1

Or see this region's nucleotide sequence